Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score =  481 bits (1238), Expect = e-140
 Identities = 286/685 (41%), Positives = 396/685 (57%), Gaps = 49/685 (7%)

Query: 5   LIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGKQKVV 64
           +++VESPAK KTI K+LG  + V AS GH+RDLP  +  V     FA  +      ++ +
Sbjct: 3   VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLPPKDGSVRPDEGFAMDWETDPKSERQI 62

Query: 65  DTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEG----KADNIKRIQFNEITARAVRE 120
             +  A   AD ++LA DPDREGEAI+WHV  ++E     K   +KR+ FNEIT  AV +
Sbjct: 63  KEIVAAVKGADKLFLATDPDREGEAISWHVRQVLEARKALKGVEVKRVVFNEITKSAVLD 122

Query: 121 ALENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIVDRES 180
           A+ NPR++++ L DA  ARR LD LVG+ LSP+LW+K+    SAGRVQSVALRLI +RES
Sbjct: 123 AMRNPREIHQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERES 182

Query: 181 ERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAHVADADAANALE 240
           E  +F P EYW   A F             P+ A   A L  + GKK    D  +     
Sbjct: 183 EIESFKPREYWTIAADFLT-----------PKGALLSAGLTHLGGKKLDKFDLSSEALAR 231

Query: 241 DA---MRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRLYEGV 297
           DA        + + AVERK+  R P PPF TSTLQQ A+++L ++A RTM +AQRLYEGV
Sbjct: 232 DAESKAASARYAVAAVERKRTRRNPYPPFTTSTLQQEASRKLYFAAARTMQLAQRLYEGV 291

Query: 298 ELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTKG-SAQDAH 356
           ++G   TV LITYMRTD V+++ EA   ARA + + +G  + P  PR +KTK  +AQ+AH
Sbjct: 292 DIGGE-TVGLITYMRTDGVQMAAEAIAGARAVIAQDFGKVYVPEAPRVYKTKAKNAQEAH 350

Query: 357 EAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIACGP--AEW 414
           EA+RP D+   P+ V   L  DQ +LY L+W R +ASQMA A  D   V IA       +
Sbjct: 351 EAIRPTDLARRPEDVARYLDKDQLRLYELIWKRTLASQMAAAELDQVGVDIAGDQHGIVF 410

Query: 415 RAKGERMLFPGFLAAMPQ-KEEGDAE-----LPPLQEGETLHPVSVEKEQKFTQPPARYT 468
           RA G  ++F GFL    + K++ D E     LP + E + +   ++  EQ FTQPP R++
Sbjct: 411 RATGSVVVFDGFLKVYREDKDDSDDEDAEKLLPDVTEKDAMDRKAMRTEQHFTQPPPRFS 470

Query: 469 EASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLM 528
           EASLV+ +EE GIGRPSTYASI+S L +R+Y RL+ + F+P D G  V   L   F   +
Sbjct: 471 EASLVKRMEELGIGRPSTYASILSVLQERNYVRLDQRRFIPEDRGRLVTAFLESFFGRYV 530

Query: 529 DVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLE--------SAAKAMETVKGG-- 578
           +  FTA +E+ LD V+ G  DW ++L RF  DF+  ++            A++ + G   
Sbjct: 531 EYNFTADLENQLDDVSGGRDDWRKVLDRFWRDFSGAVDETKDLRVAQVLDALDELLGPHF 590

Query: 579 LPTDVT------CPECGK-PVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRA 631
            P + T      CP C    + +K GK G F+ C+AYP+C+FT   +   +G    E+  
Sbjct: 591 FPDNGTGHDPRSCPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGEG----EEEV 646

Query: 632 REELEAVGTCPECGKDLVVKKARTG 656
           RE  + +G  PE G  + ++K   G
Sbjct: 647 REGPKELGNDPESGLPVTLRKGPYG 671