Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola 67-19

 Score =  506 bits (1302), Expect = e-147
 Identities = 311/801 (38%), Positives = 431/801 (53%), Gaps = 103/801 (12%)

Query: 1   MGKDLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPT--------------------- 39
           MGK L+IVESPAK KTI K+LG  +VV++SVGHVRDLPT                     
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA 60

Query: 40  ----------NEIGVDEANNFAPQYRVIDGKQKVVDTLREAAAKADTVYLAPDPDREGEA 89
                     N +GVD    +   Y ++ GK+KVV  L+  A  AD VYLA D DREGEA
Sbjct: 61  VKKDEKTALVNRMGVDPYRGWQAHYEILPGKEKVVSELKALAQNADHVYLATDLDREGEA 120

Query: 90  IAWHVAALIEGKADNIKRIQFNEITARAVREALENPRDLNRALFDAQQARRVLDRLVGYK 149
           IAWH+  +I G      R+ FNEIT  A+R+A ENP +LN    +AQQARR +DR+VGY 
Sbjct: 121 IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFENPGELNINRVNAQQARRFMDRVVGYM 180

Query: 150 LSPLLWKKVKRGISAGRVQSVALRLIVDRESERRAFTPEEYWLFRAMFAKNVPGATPTSP 209
           +SPLLWKK+ RG+SAGRVQSVA+RL+V+RE E +AF PEEYW   A    N         
Sbjct: 181 VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLAN--------- 231

Query: 210 DPQYAPFKAELAKIDGKKAHVADADAANALEDAMRGKPFVITAVERKKRERQPQPPFITS 269
            P+ A  + ++   +GK     +     A    +    +V+   E K    +P  PFITS
Sbjct: 232 -PEIA-LQMQVTHHNGKPFRPVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITS 289

Query: 270 TLQQAANQRLGYSAKRTMNIAQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAARAF 329
           TLQQAA+ RLG+  K+TM +AQRLYE            ITYMRTDS  +S +A   AR +
Sbjct: 290 TLQQAASTRLGFGVKKTMMMAQRLYE---------AGHITYMRTDSTNLSQDALTMARDY 340

Query: 330 VTETWGADFCPAKPRQFKTKGSAQDAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSR 389
           + + +G  + P     + +K ++Q+AHEA+RP DV V  D +K  +  D  +LY+L+W +
Sbjct: 341 IHDEFGKRYLPEAANLYTSKENSQEAHEAIRPSDVKVQADQLKD-MEADAQKLYQLIWRQ 399

Query: 390 FVASQMAPARFDDTTVAIACGPAEWRAKGERMLFPGFLAAMPQKEEGDAE--LPPLQEGE 447
           FVA QM PA++D TT+ ++ G  + RAKG  + F G+   MP   +GD +  LP +  G+
Sbjct: 400 FVACQMMPAQYDSTTLVVSAGDYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIDVGQ 459

Query: 448 TLHPVSVEKEQKFTQPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHF 507
           +L    +   Q FT+PPARY+EASLV+ELE+RGIGRPSTYA+IIST+ DR Y R+E++ F
Sbjct: 460 SLSLEKLLPSQHFTKPPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRF 519

Query: 508 VPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLES 567
               +G  V D L  +F  LM+  FTA+ME+ LD VA    +W  +L  F A+F+  LE+
Sbjct: 520 YAEKMGEIVTDRLEDNFRELMNYDFTARMENRLDLVANSQAEWKGVLDEFFAEFSKQLET 579

Query: 568 AAKAMETVKGGLP------TDVTCPECGKPVVVKFGKAGPFLACTAY-----PDCKFTSN 616
           A   +E   GG+       T + CP CG+ + ++    G FL C+ Y       CK T N
Sbjct: 580 A--ELEPNDGGMKPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTIN 637

Query: 617 FSRDEKGDIVIE--QRAREELEAVGTCPECGKDLVVKKARTGSRFIACTGYPDCRHTEPF 674
              + +   V+E  +     L A   C +CG  +         +   C   P        
Sbjct: 638 LIPEAEVLNVLEGDEAETNALRARRRCSKCGTAMDSYLIDNQRKLHVCGNNP-------- 689

Query: 675 STGIACPREGCDGQLVEKSSKRGKIFYSCNRFPKCDYALWDWPVPGPCPVCGSPLLVKKS 734
                     CDG  +E+   R K +              D PV   C  C S + +K  
Sbjct: 690 ---------SCDGYEIEQGEFRLKGY--------------DGPVV-ECEKCSSEMHLKMG 725

Query: 735 TRAKGLHIACPEKTCRYTQEL 755
              K  ++AC  ++C  T+++
Sbjct: 726 RFGK--YMACTNESCGNTRKI 744



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 583 VTCPECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCP 642
           V C +C   + +K G+ G ++ACT    C  T    R+  G++   +     L  +  C 
Sbjct: 711 VECEKCSSEMHLKMGRFGKYMACT-NESCGNTRKILRN--GEVAPPKEDPVPLPEL-PCE 766

Query: 643 ECGKDLVVKKARTGSRFIACTGYPDCRHT 671
           +     V++    G  F+A   +P  R T
Sbjct: 767 KSDAYFVLRDGAAGV-FLAANTFPKSRET 794