Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 868 a.a., type I DNA topoisomerase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  471 bits (1211), Expect = e-137
 Identities = 290/692 (41%), Positives = 390/692 (56%), Gaps = 61/692 (8%)

Query: 4   DLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGKQKV 63
           +L+IVESPAK KTI K+LG  Y V AS GHVRDLP+ +  V   ++F+  +       K 
Sbjct: 2   NLVIVESPAKAKTINKYLGSDYEVLASYGHVRDLPSKDGSVLPDDDFSMHWEADAKGAKR 61

Query: 64  VDTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEGKA----DNIKRIQFNEITARAVR 119
           +  + EAA +AD V LA DPDREGEAI+WHV  ++  K      +++R+ FN IT  AV 
Sbjct: 62  LSEIAEAAKRADRVILATDPDREGEAISWHVLEVLNKKKALKDTHVERVTFNAITKSAVL 121

Query: 120 EALENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIVDRE 179
           EA+ NPR ++  L +A  ARR LD LVG+ LSP+LW+K+    SAGRVQSVALR++VDRE
Sbjct: 122 EAMANPRQIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIVVDRE 181

Query: 180 SERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAH---VADADAA 236
            E   F  +EYW   A    + P            PF A L K  GK+     + D   A
Sbjct: 182 MEIEKFKAQEYWSIEADLNADSP------------PFTARLVKHAGKRIQRLDIKDEATA 229

Query: 237 NALEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRLYEG 296
           +A   A+    F I AVE+K   R P PPF TSTLQQ A ++LG+SA+RTM  AQ+LYEG
Sbjct: 230 SAARAAIAAGDFTINAVEKKPVRRNPAPPFTTSTLQQEAARKLGFSAQRTMQAAQKLYEG 289

Query: 297 VELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTKG-SAQDA 355
           V+     T  LITYMRTD V+ + E    AR  +++ +G  F P +PR +KTK  +AQ+A
Sbjct: 290 VD----ETGGLITYMRTDGVQTTPEGIAQAREVISQAFGPAFVPQEPRYYKTKAKNAQEA 345

Query: 356 HEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIAC--GPAE 413
           HEA+RP ++   PDS++  L  D  +LY L+W R VASQM  AR D TTV I    G   
Sbjct: 346 HEAIRPTNIARHPDSLR--LESDLQRLYELIWKRMVASQMEAARMDRTTVDIETTDGQTG 403

Query: 414 WRAKGERMLFPGFLAAMPQ----KEEG--------DAELPPLQEGETLHPVSVEKEQKFT 461
            RA G+ + F GFLA   +    K++G         + LP L+EG      ++  +Q FT
Sbjct: 404 LRATGQVVTFDGFLAVYEEGRDEKQKGAEDDESDDTSRLPALKEGAKAKVDAIRTDQHFT 463

Query: 462 QPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLA 521
           +PP RY+EA+LV++LEE GIGRPSTYAS +STL DR+Y R++   F P D G  V   L 
Sbjct: 464 EPPPRYSEATLVKKLEELGIGRPSTYASTLSTLRDREYVRVDKNRFYPEDKGRLVTAFLE 523

Query: 522 RHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLESAAKAMETV------ 575
           + F   ++  FTA +E  LD+V+ G LDW  LL  F  DF+   ++A +   T       
Sbjct: 524 QFFKKWVEYDFTAALETQLDEVSAGQLDWKVLLRNFWQDFHAATQAAGELRTTAILDALN 583

Query: 576 ----------KGGLPTDVTCPECGK-PVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGD 624
                     KG       CP C +  + +K  + G F+ C  YP+CK+T   +     D
Sbjct: 584 ESLGAHIFPDKGDGTDPRECPLCHQGQLSLKTSRFGAFIGCDRYPECKYTRPVASPSAED 643

Query: 625 IVIEQRAREELEAVGTCPECGKDLVVKKARTG 656
              E   RE    +G  PE G+ + +K  R G
Sbjct: 644 GSAESGDRE----LGIDPETGQPVQLKIGRFG 671



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 687 GQLVEKSSKRGKIFYSCNRFPKCDYALWDWPVPGPCPVCGS 727
           GQL  K+S+ G  F  C+R+P+C Y     PV  P    GS
Sbjct: 609 GQLSLKTSRFGA-FIGCDRYPECKYTR---PVASPSAEDGS 645



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 586 PECGKPVVVKFGKAGPFLACT-AYPDCKFTSNFSRD-EKGDIVIEQRAR--EELEAVGTC 641
           PE G+PV +K G+ GP++  T    D    S+  +D     + ++Q  R       VG  
Sbjct: 657 PETGQPVQLKIGRFGPYVEITPPEGDKPKRSSLPKDWSPASLSLDQALRLLALPREVGVH 716

Query: 642 PECGKDLVVKKARTG 656
           PE GK +     R G
Sbjct: 717 PEDGKMITAGLGRYG 731