Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 467 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  344 bits (883), Expect = 3e-99
 Identities = 200/456 (43%), Positives = 272/456 (59%), Gaps = 7/456 (1%)

Query: 3   DVTVLIVDD--DVAHRTMLRTMLRGWGYAT-DEADDGETAVEKVREKARDAVLMDVRMAR 59
           D  +LIVDD  D AH  + R + R +  A+   A  G  A+  ++      +L D+RM  
Sbjct: 6   DEHILIVDDEPDFAHG-LARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPD 64

Query: 60  MGGIEALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERAL 119
           M G+E +++ +  +P   V+++TA+ S+ETAV AL+ GAYD+LTKP+  + L+ TL +AL
Sbjct: 65  MDGMELMQQAMTVDPTTSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKAL 124

Query: 120 DHTRLVSENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKE 179
           +  R++ EN+ L+  +        +IG S  M+ L E +A +A ++ +VLI GESGTGKE
Sbjct: 125 ERIRILKENKRLRQMMQQGCIERQMIGESPVMQRLKETIAAIAATDYSVLIRGESGTGKE 184

Query: 180 LVARSLHEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGT 239
           LVA  LH    R  + LV VNC ++ + LLESELFGH +GAFTGAD+ R G F+ A  GT
Sbjct: 185 LVADMLHRLGSRRERPLVKVNCPSIPDQLLESELFGHVKGAFTGADRTRRGLFMSAQRGT 244

Query: 240 LFLDEIGELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFRE 299
           L LDEIG++   LQ KLLR LQ+ EI+ VGS     VDVR++A+TNR L E +  G FRE
Sbjct: 245 LLLDEIGDIGEALQTKLLRVLQEREIRPVGSSASTLVDVRIIASTNRALEERIKQGLFRE 304

Query: 300 DLFYRLNVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPG 359
           DLFYRLNV+ IH P LRER DDIPLLA HF+          +K  +P A+  L    WPG
Sbjct: 305 DLFYRLNVLTIHTPPLRERRDDIPLLADHFVAATCRELSSPVKRISPGALACLAGREWPG 364

Query: 360 NVRELENAVERAVIMATGDWVGERELPMSLRGAGGADPAVADAALPTGQDPYAGLSLEDL 419
           NVREL+N + R V+   GD +    L +     G   P  A+           G  +ED 
Sbjct: 365 NVRELQNYIRRLVVFCPGDTIDTAHLRLV---DGTTCPTTAETPSLVPYKEAKGAVVEDF 421

Query: 420 ERRAIVATLRETGDNKSEAARRLGITRATLHNKLKK 455
            RR +   LR+TG N SEAAR  GI R +L   L++
Sbjct: 422 TRRYVEGLLRQTGGNISEAARLSGIERVSLQKILRR 457