Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  357 bits (917), Expect = e-103
 Identities = 196/467 (41%), Positives = 292/467 (62%), Gaps = 13/467 (2%)

Query: 6   VLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEA 65
           +LIVDDD   R   + +L   G+    A  GE  +  VRE+  + V+MDVRM  M G++A
Sbjct: 4   ILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDA 63

Query: 66  LRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTRLV 125
           L+ + E +  +PV+IMTAY++ ETA+EA + GA+DY+ KP D   +   +++A++  R +
Sbjct: 64  LKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRRM 123

Query: 126 SENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKELVARSL 185
                +     D   A  ++G S  M E+ + +   AP++A VL+ GESGTGKELVAR++
Sbjct: 124 RGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAI 183

Query: 186 HEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTLFLDEI 245
           ++ S R+ +  + +NC A+ ++LLESELFG+E+GAFTGA  RR G+  QA GGT+FLDEI
Sbjct: 184 YQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEI 243

Query: 246 GELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFREDLFYRL 305
           G++PL +QAKLLR LQ+ +I+R+G    + VDVR++AATN DL   VA GRFREDL+YRL
Sbjct: 244 GDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRL 303

Query: 306 NVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGNVRELE 365
            V+ + +P LRER +DIP LA  FL R+A        G + +A+  +  HPWPGNVREL 
Sbjct: 304 KVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELG 363

Query: 366 NAVERAVIMATGDWVGERELPMSLRGAGGA------DPAVADAALP------TGQDPYAG 413
           NA+++A++   G  +   ++  +L G  G+      D    D  L       +G D  A 
Sbjct: 364 NAIQKALVFNRGAPLLPEDIRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSGGDDNAF 423

Query: 414 LSLEDLERRAIV-ATLRETGDNKSEAARRLGITRATLHNKLKKYDLE 459
            ++ D   R +V   L+ TG N++ AAR LG++R TL  ++++Y L+
Sbjct: 424 ETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGLK 470