Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  240 bits (612), Expect = 6e-68
 Identities = 141/368 (38%), Positives = 217/368 (58%), Gaps = 8/368 (2%)

Query: 14  ALLALATAT-GIYG--CDSRNAYVPPPPPKVTVGAPHVGPVTEYMEFSGTIAAVESVDIT 70
           ALLA+A A  G+Y    ++ N    P    V+V       +  + EFSG + AVE VD+ 
Sbjct: 25  ALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVR 84

Query: 71  ARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARS 130
           +RV G +++  FR+G+ V +GD L  I+P PY A ++RAEA++   QA  + + +E  R+
Sbjct: 85  SRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERA 144

Query: 131 RKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFA 190
           ++L  +KA ++ +  +       A AN+  A+A +++AR++LGYT++ AP  G+I R   
Sbjct: 145 KRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEV 204

Query: 191 DPGNVV--GPGAVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAP--TMPLEL 246
             GN+V  GPGA   L T+V    ++  F+ +E+ + R + + P   +A     ++P+++
Sbjct: 205 TVGNLVAAGPGAPV-LTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIESIPVQM 263

Query: 247 ALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAM 306
             A  DG P  GKL   D  VD  +GT+++R  F N  G L+PG FARIR+   +SD A+
Sbjct: 264 GTAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARSDSAL 323

Query: 307 MVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRA 366
           +V +RAIG DQ+  +V++V   + A  R V LG    G RVVSKGL A DRV+VNG+Q  
Sbjct: 324 LVSERAIGTDQNKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHI 383

Query: 367 RPGSPVDP 374
           RPG+ V P
Sbjct: 384 RPGALVAP 391