Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 386 a.a., MexE family multidrug efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  226 bits (577), Expect = 6e-64
 Identities = 133/370 (35%), Positives = 206/370 (55%), Gaps = 13/370 (3%)

Query: 13  IALLALATATGIYGCDSRNAYVPPPP--PKVTVGAPHVGPVTEYMEFSGTIAAVESVDIT 70
           +AL  +A     +   S      PPP  P VTV  P    +T++ E++G  AAV+ V+I 
Sbjct: 20  LALAGVAAGVVSFSSTSSGPAGAPPPAGPAVTVATPASRTITDWSEYTGQFAAVDYVEIR 79

Query: 71  ARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARS 130
           ARV G L    F DG  V+KGD LF+I+P PY+ AL  A A+L+        A+ +L+R+
Sbjct: 80  ARVNGYLTEVHFTDGQLVNKGDLLFVIDPRPYEIALASARAKLDQAMGTKEYAKRQLSRA 139

Query: 131 RKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFA 190
            +L  ++  +E+ + +  ++   A A +  A+A +  A ++L +TR+TAP  G+I  +  
Sbjct: 140 GELHRKEFVAESTLDQRTEESRGAGATVEAARAAVRDAELNLQFTRVTAPISGRIGAKQV 199

Query: 191 DPGNVV--GP--GAVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLEL 246
             GN+V  GP   + T L+TIV +D +HV F++ E D L       + K  +A   P++L
Sbjct: 200 SIGNLVTGGPTVASPTLLSTIVSQDPIHVTFDLTEADYL------AQAKRGNAVGTPVQL 253

Query: 247 ALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAM 306
            L  E G+P  GKLD+ D  +D  TGT++ R +  N  G++  G F R+R+A      ++
Sbjct: 254 RLMSETGWPREGKLDFVDNQIDKGTGTIRARAVLANAEGQVPSGAFGRVRLATSVPYTSL 313

Query: 307 MVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRA 366
           MVPD AI  DQ+   V+ V    +   + VVLGP     RV+  GL+ +D+V++NG+ RA
Sbjct: 314 MVPDTAIVTDQARKLVMTVKDGTVV-PKPVVLGPKDGELRVIRDGLAPDDQVIINGLMRA 372

Query: 367 RPGSPVDPTP 376
           RPG+ V   P
Sbjct: 373 RPGAKVSAQP 382