Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 384 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

 Score =  230 bits (586), Expect = 6e-65
 Identities = 131/383 (34%), Positives = 210/383 (54%), Gaps = 6/383 (1%)

Query: 8   SRAVHIALLALATATGIYGC-DSRNAYVPPPPPKVTVGAPHVGPVTEYMEFSGTIAAVES 66
           ++ V +   A++ A  + GC ++ +A  P  PP V V    V PVT ++EF+G++ AV+ 
Sbjct: 3   AKRVTLITAAISVAFAVAGCKETVSAAAPAKPPSVPVAEVVVRPVTPFVEFTGSLTAVKQ 62

Query: 67  VDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETE 126
           V++  RV G L+     +G  V KG  LF+I+   Y+AAL  A+A L   +AA   A+TE
Sbjct: 63  VELRPRVAGYLQDVSVPEGRWVEKGQRLFLIDSRVYEAALSAAKARLREAEAAARLAQTE 122

Query: 127 LARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQIS 186
            AR+ +L  +K  +   +       ++ KA +  AKA +  A +D+ +TR+TAP  G++ 
Sbjct: 123 YARATQLFAQKVFARAQLDTATASLNAGKAQVDAAKAALAAAELDMEFTRVTAPISGRVG 182

Query: 187 RRFADPGNVVGPGAVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLEL 246
           +     GN V  G VT L TIV  + + VYF+++ER  LR +A       A+ P   + +
Sbjct: 183 QVLVTEGNYVTNG-VTPLTTIVSTNPLQVYFDVDERTYLRSLA--TDLTRATPPATKVMV 239

Query: 247 ALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAM 306
           AL  +  +   G++D+     D  TGT+++R +  N  G+L PGLFA++++  G     +
Sbjct: 240 ALITDKTYTRTGRVDFLANSADRGTGTVRIRAVVDNADGQLTPGLFAKVKLETGAPRARV 299

Query: 307 MVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRA 366
           +V D++IG DQ   YV++V   +  E R V LGP+ EG RV+ +GL   +R+VV G+   
Sbjct: 300 LVSDQSIGTDQGRRYVLVVGKGDKTEYRPVELGPMVEGMRVIEQGLQPGERIVVKGL--V 357

Query: 367 RPGSPVDPTPAPDTGQPAGKPAS 389
           RPG  + P      G P   P +
Sbjct: 358 RPGMQITPQTTAIDGAPMTAPTT 380