Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 395 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

 Score =  231 bits (590), Expect = 2e-65
 Identities = 141/378 (37%), Positives = 229/378 (60%), Gaps = 19/378 (5%)

Query: 3   RRHTISRAVHIALLALATATGIYGCDSRNAY-VPPPPPKVTVGAPHVGPVTEYMEFSGTI 61
           R + I     ++ +AL   T + GCD+  A    PPPP V+     + P++++  F+G I
Sbjct: 14  RHNAIGFGARLSAIALLV-TLLAGCDNSAAKNAAPPPPAVSAADVVIKPISQWDTFNGRI 72

Query: 62  AAVESVDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAEL--EVQQAA 119
            AV+SV +  RV+G +    + +G  V KG  LF I+   Y+AA ++A+AEL     QAA
Sbjct: 73  EAVQSVQLRPRVSGYIDKVNYTEGDEVKKGQVLFTIDDRTYRAAREQAQAELVRARNQAA 132

Query: 120 LARAETELARSRKLLTEKAGSETDVVKWQQQRDSA---KANISRAKAQIETARIDLGYTR 176
           LAR+E+  +R+ KL+  +A S T+V  W+Q+R SA   ++N+  A+AQ + A+++L +TR
Sbjct: 133 LARSES--SRTEKLIGSQAIS-TEV--WEQRRSSAAQAQSNVLAAQAQFDMAQLNLDFTR 187

Query: 177 ITAPFDGQISRRFADPGNVVGPG-AVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPK 235
           + AP DG+ SR     GN+V  G + + L T+V  D+V+VYF+++E   LR   +    +
Sbjct: 188 VIAPIDGRASRAMITAGNLVTAGDSASVLTTLVSLDKVYVYFDVDEATFLRY--QNDGRR 245

Query: 236 TASAPTMPLELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARI 295
           TA    +P+++ L  EDG+PH G +D+ D  ++  TGT+++R L  N   R  PGLFAR+
Sbjct: 246 TAK---LPVKVGLVGEDGYPHQGVVDFTDNQLNAGTGTIRMRALLENAERRFTPGLFARV 302

Query: 296 RVAVGQSDKAMMVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAE 355
           ++       AM++ D+++  DQ   +V IV+    A++R + +G + +G R+V KGLSA 
Sbjct: 303 QMPGSAVFNAMLIDDKSVMTDQDRKFVYIVDKDGKAQRRDIEVGRVADGLRIVRKGLSAG 362

Query: 356 DRVVVNGIQRA-RPGSPV 372
           DRV+V+G+Q+   PG PV
Sbjct: 363 DRVIVDGMQKVFMPGMPV 380