Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 408 a.a., RND efflux system, membrane fusion protein CmeA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  208 bits (529), Expect = 3e-58
 Identities = 120/358 (33%), Positives = 196/358 (54%), Gaps = 13/358 (3%)

Query: 28  DSRNAYVPP----PPPKVTVGAPHVGPVTEYMEFSGTIAAVESVDITARVTGTLRSAQFR 83
           D  NA  PP    PPP V V       +    EF+G +AA E+V++ +RV GTL +    
Sbjct: 30  DKDNAVGPPASAPPPPSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAISVP 89

Query: 84  DGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARSRKLLTEKAGSETD 143
           +G  V +G  LF I+P P++ AL  A A+L   +    +A+ +  R ++L+   A S  +
Sbjct: 90  EGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKN 149

Query: 144 VVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFADPGNVVGPGA--- 200
                  R++ +A +  AKA +  AR++L +TRITAP  G++ R     GN+V  G    
Sbjct: 150 ADDVTATRNARQAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGN 209

Query: 201 VTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLELALADEDGFPHAGKL 260
            T L TIV  + ++VYF+I+E   L+ +      K        + + L  ++G P+ G L
Sbjct: 210 ATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPPV----VNMGLTTDNGLPYQGVL 265

Query: 261 DYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAMMVPDRAIGQDQSGS 320
           D+    ++ +TGT++ R + P+P G L PGLFARI + +G+  + +++ D A+  DQ  +
Sbjct: 266 DFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKN 325

Query: 321 YVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRARPGSPVDPTPAP 378
           YV+IV  +N  E R V LG + +G+RVV++G+   +++++ G+   RPG  V P   P
Sbjct: 326 YVLIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGL--VRPGMTVAPRLVP 381