Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 396 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  243 bits (621), Expect = 5e-69
 Identities = 138/370 (37%), Positives = 215/370 (58%), Gaps = 11/370 (2%)

Query: 16  LALATATGIYGCD---SRNAYVPPPPPK-----VTVGAPHVGPVTEYMEFSGTIAAVESV 67
           LA++ A G    D   SRNA     P +     VTV       V  + EFSG + AV+ V
Sbjct: 17  LAMSVAAGALFFDLPTSRNATAASTPAETPAIPVTVAKVESRDVMRWEEFSGRLEAVDRV 76

Query: 68  DITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETEL 127
            I +RV G +++  FR+G+ V +GDPLF I+P PYQAA+  AE ++   +A ++ A+TEL
Sbjct: 77  QIRSRVAGQIKAVHFREGALVKEGDPLFTIDPAPYQAAVAGAEGQVASAEAKVSLAKTEL 136

Query: 128 ARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISR 187
            R R+L   +  S++D+ + Q     A+A +  A+A + TA++DLGYT I AP  G++ R
Sbjct: 137 DRGRRLSDNRTISQSDLDQRQSSFADAEAQLRAARAALTTAQLDLGYTEIIAPVSGRVGR 196

Query: 188 RFADPGNVVGPGAVT-RLATIVRRDQVHVYFNINERDLLRLMAERPKPKTA--SAPTMPL 244
                GN+V  G+ +  L T+V  + ++  FN +E  + + +AE PK   A  +   +P+
Sbjct: 197 IEITAGNLVAAGSTSPALTTLVSVNPIYASFNASEGVVAKALAELPKTDGALPALEQIPV 256

Query: 245 ELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDK 304
           E+    ++G P  G L   D  VD A+GT+ +R +F NP GRL+PG F R+R+   + + 
Sbjct: 257 EIGTLSDEGTPIKGTLHLIDNQVDSASGTIGVRAIFDNPDGRLIPGQFVRVRMGEPKPEN 316

Query: 305 AMMVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQ 364
            +++ DRAIG DQ   +V +V+A+N    R +  G   +G R++  GL+A D +VVNG+Q
Sbjct: 317 RIVISDRAIGTDQDKRFVFVVDAENKVSYRQIKPGAPADGQRIIDSGLAAGDTIVVNGLQ 376

Query: 365 RARPGSPVDP 374
           R RPG+ + P
Sbjct: 377 RIRPGATIAP 386