Pairwise Alignments

Query, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 492 a.a., efflux transporter outer membrane subunit from Dickeya dianthicola ME23

 Score =  230 bits (587), Expect = 8e-65
 Identities = 168/476 (35%), Positives = 237/476 (49%), Gaps = 19/476 (3%)

Query: 37  LLTACAKVGPDFSAPGGDVPDVWQDASHPV---ASSDADVDGTWWNTFNDPVLDSLVTEA 93
           LLT CA VGPD++ P   +   +   +      A++ A++  TWW  F DP L   VT A
Sbjct: 15  LLTGCA-VGPDYTRPDMSMQKKYLGQAAVTQRHAATQAELV-TWWEGFGDPQLTRFVTLA 72

Query: 94  RSANLSLHLAALRVFEARARLGAAVGNLYPQTQQGTGGLTWTHPSDRAPTAP--QPTTGR 151
           +  NL L  A+ RV +ARA LGAA   L P     +G  +  + S   P       T G 
Sbjct: 73  QEQNLDLAQASARVIQARAGLGAANAALLPSGNI-SGQASRAYQSVETPLGKVLNSTPGF 131

Query: 152 DNPDYVQTSAGLDVAWELDFWGKFRRGIEAADADLRASMADHQTALVSVSAEVARSYILY 211
           D        A L  +WELD +G  RRG EAA A+ +AS A      ++V+A+ A  YI  
Sbjct: 132 DRYGNAY-EADLGASWELDVFGGLRRGREAALAEYQASEAGVAATRLAVAAQTADIYITI 190

Query: 212 RTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRDTEARIPNLAHSLR 271
           R +Q +L +A   V  Q++ L      ++ G  +E  +RQA   L   +A +P L  +L 
Sbjct: 191 RGLQARLNVARRQVQTQQDLLATINRLYDKGLAAELQVRQAEGALAQVQASVPVLQTALD 250

Query: 272 ETRNALCVLLGKAPQDISARLGDA-PIPTAPTHVAVGIPADLLRRRPDVHKALATAAGQC 330
              NAL V+LG AP    A L +A  IP AP   A G P +LLRRRPD+  A    A   
Sbjct: 251 TAMNALDVMLGSAPGTNRAVLAEASAIPAAPQITATGTPGELLRRRPDLIVAERRLAASN 310

Query: 331 ARLGVAKADFYPAFTLGGFVG--FTASNVGAFGLGDTFSNGFTAYGGPGLSLPLFNYGRI 388
           AR+GVA A++YP F+L G +G   T S    F  G + S+G       GL   LF++GRI
Sbjct: 311 ARIGVAIAEYYPKFSLSGLLGSATTVSGSNLFTSGASQSSGVI-----GLRWRLFDFGRI 365

Query: 389 VSNVRAQDARFQQSLTSYRETVLVALRETEDAIDRFIQAQGRTALLTESASDAARSMQLA 448
            + +     +  ++L +YR  VL A  + E+A    +  + +  +LT+     +R+   A
Sbjct: 366 NAQINQAKGQEAETLAAYRLAVLRATEDVENAFSALVNNEEQAHVLTQGVDSLSRARDAA 425

Query: 449 LIQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQSLVAMFKALGGGWHKLPGD 504
              YQ G+     VL A   +    DA   A+ E  ++ VA FKALGGGW   PG+
Sbjct: 426 FAAYQHGTLSLIEVLQADESMLRASDARLQAQAESARAAVAAFKALGGGWQ--PGE 479