Pairwise Alignments

Query, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 492 a.a., efflux transporter outer membrane subunit from Dickeya dadantii 3937

 Score =  239 bits (609), Expect = 2e-67
 Identities = 170/483 (35%), Positives = 244/483 (50%), Gaps = 16/483 (3%)

Query: 30  TPVLLLT---LLTACAKVGPDFSAPGGDVPDVW--QDASHPVASSDADVDGTWWNTFNDP 84
           +PV++LT   LL  CA VGPD++ P   + + +  Q+A +   ++      TWW  F DP
Sbjct: 5   SPVIVLTVAGLLAGCA-VGPDYTRPAVSMQEKYLGQEAVNQRHAAARAELLTWWEGFGDP 63

Query: 85  VLDSLVTEARSANLSLHLAALRVFEARARLGAAVGNLYPQTQ-QGTGGLTWTHPSDRAPT 143
            L   +T+A   NL L  A+ RV +ARA LGAA   L P     G  G  +         
Sbjct: 64  QLTRFITQALQQNLDLAQASARVVQARAGLGAANAALLPSGNISGQAGRAYQSVETPLGK 123

Query: 144 APQPTTGRDNPDYVQTSAGLDVAWELDFWGKFRRGIEAADADLRASMADHQTALVSVSAE 203
               T G D        A L  +WELD +G  RRG EAA A+ +AS A      ++V+A+
Sbjct: 124 VLNSTPGFDRYGN-SYEANLGASWELDVFGGLRRGREAALAEYQASEAGVVATRLAVAAQ 182

Query: 204 VARSYILYRTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRDTEARI 263
            A  YI  R +Q +L +A   V  Q++ L      ++ G  +E  +RQA   L   +A +
Sbjct: 183 TADIYITIRGLQARLNVARRQVQTQQDLLATINRLYDKGLAAELQVRQAEGALAQVQASV 242

Query: 264 PNLAHSLRETRNALCVLLGKAPQDISARLGD-APIPTAPTHVAVGIPADLLRRRPDVHKA 322
           P L  +L    NAL V+LG AP    A L + + IP AP   A G P +LLRRRPD+  A
Sbjct: 243 PVLQTALDTAMNALDVMLGAAPGTHRAVLAETSAIPAAPQIAATGTPGELLRRRPDLIVA 302

Query: 323 LATAAGQCARLGVAKADFYPAFTLGGFVGFTASNVGAFGLGDTFSNGFTAYGGP-GLSLP 381
               A   AR+GVA A++YP F+L G +G +A+ V +   G+ FSNG +   G  GL   
Sbjct: 303 ERRLAASNARIGVAVAEYYPKFSLSGLLG-SATTVSS---GNLFSNGASQSSGVIGLRWR 358

Query: 382 LFNYGRIVSNVRAQDARFQQSLTSYRETVLVALRETEDAIDRFIQAQGRTALLTESASDA 441
           LF++GRI + +     +  + L +YR  VL A  + E+A    +  + +  +LT+     
Sbjct: 359 LFDFGRINAQINQAKGQEAEMLAAYRLAVLRATEDVENAFSALVNNEEQARVLTQGVDSL 418

Query: 442 ARSMQLALIQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQSLVAMFKALGGGWHKL 501
           +R+   A   YQ G+     VL A   +    DA   A+ E  ++ VA FKALGGGW   
Sbjct: 419 SRARDAAFAAYQHGTLSLIEVLQADESMLRASDARLQAQAESARAAVAAFKALGGGWQ-- 476

Query: 502 PGD 504
           PG+
Sbjct: 477 PGE 479