Pairwise Alignments

Query, 248 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 3e-26
 Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 17  AGKTMQHTGMLYPGARIGVAVSGGMDSWVLLQVLRIRQRIVPFPFEIMALHVN---PGFD 73
           AG+ +    M+  G ++ V +SGG DS+ +L VL   Q++ P  FEI+A++++   PGF 
Sbjct: 19  AGEAITDYNMIEDGDKVMVCLSGGKDSYTMLDVLLHLQKVAPITFEIVAVNMDQKQPGF- 77

Query: 74  PENHAPLLPWLERNGVAAHIEVTDHGPRAHSPENRRNSACFYCAWLRRKRLFELCAQYRL 133
           PE+  P   +L+  GV  HI   D             + C  C+ LRR  L+    +   
Sbjct: 78  PEHVLPA--YLKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGA 135

Query: 134 SHLAFGHNADDLVGTFLMNLYQNGRVDGMSMKEAFFGGRLQVIRPLLMVEKSDIARAVRQ 193
           + +A GH+ DD+V TF +N++ NG + GM  K     GR  VIRPL    + DI      
Sbjct: 136 TKMALGHHRDDIVETFFLNMFFNGALKGMPPKLRADDGRNVVIRPLAYCSERDIQAYSDM 195

Query: 194 WGLPVW-SNPCPSAGATRRSEVMDDFQRLCRENKGMKRNVFNGL 236
              P+   N C S    +R  V D      R++ G   ++F  L
Sbjct: 196 KAFPIIPCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIFRAL 239