Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp000427505 FW510-R12

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 60  RNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAM---LDELRRLDWFPRSL 116
           R ++  +LI  G +GLM+A+ KF+ + G +F TYA   IR A+   + +  R    P  +
Sbjct: 407 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 466

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLSLEAMQDSL 176
            + + +L+   +++  + GR AT E+L K   + E  +R  L+  +  + +      D  
Sbjct: 467 IETINKLNRISRQMLQQFGREATPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDED 526

Query: 177 AGEGGPQSD---ADPMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVM 233
           +  G    D   + P+ +A    L+E V  ++  LTPRE  VL + +  ++N   T E +
Sbjct: 527 SHLGDFIEDGNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEV 586

Query: 234 G----ITEGRVSQLHSQALGRLRREFRN 257
           G    +T  R+ Q+ ++AL +LR   R+
Sbjct: 587 GKQFDVTRERIRQIEAKALRKLRHPSRS 614