Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 60  RNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAM---LDELRRLDWFPRSL 116
           R ++  +LI  G +GLM+A+ KF+ + G +F TYA   IR A+   + +  R    P  +
Sbjct: 400 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 459

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLSLEAMQDSL 176
            + + +L+   +++  E GR  T E+L +   + E  +R  L+  +  + +      D  
Sbjct: 460 IETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDED 519

Query: 177 AGEGGPQSDA---DPMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVM 233
           +  G    D+    P+  A  + L E    ++  LT RE  VL + +  ++N   T E +
Sbjct: 520 SHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEV 579

Query: 234 G----ITEGRVSQLHSQALGRLRREFRNHY 259
           G    +T  R+ Q+ ++AL +LR   R+ +
Sbjct: 580 GKQFDVTRERIRQIEAKALRKLRHPTRSEH 609



 Score = 27.7 bits (60), Expect = 6e-04
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 22/104 (21%)

Query: 139 TEEDLQKATGLDEKDVRLGLE---------ALQNQLCLSLEAMQDSLAGEGGPQSDADPM 189
           TE+D  +A+G DE +V  G +         A+ +Q+ ++ +A++    G    Q+ A+ +
Sbjct: 196 TEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKKH--GRANKQAIAELV 253

Query: 190 QTAAT-----------QELIERVASLIDELTPREKLVLSLYYSD 222
             A             + L+ERV S ++ L  +E+ ++ L   D
Sbjct: 254 ALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRD 297