Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 12/203 (5%)

Query: 61  NVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAMLDELRRL----DWFPRSL 116
           +VE  + +    +GL+EA+ +F P  G +F+T+A  R++GA+L+ L R          S+
Sbjct: 14  DVEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSM 73

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLSL----EAM 172
           R R  +L EA++    +    A +      +G   +++   L  +   L LS+      M
Sbjct: 74  RLRRERL-EAVKDAAAQAAPGAAQGTDSPPSGRQPEELFRYLAEVGIGLALSVMLEDTGM 132

Query: 173 QDSLA-GEGG--PQSDADPMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRET 229
            DS A G+ G  P  +    + +   +L   + +L+D L  ++++V+  +Y  E+   E 
Sbjct: 133 IDSGAPGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEI 192

Query: 230 AEVMGITEGRVSQLHSQALGRLR 252
           A  +G+T GRVSQLH QALGRLR
Sbjct: 193 ARRVGLTRGRVSQLHRQALGRLR 215