Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 1e-40
 Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 35  EKEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYA 94
           EK  ++  + P +R +AL++ AKLP +VEL +LI AG LGL++A  +++   G +FET+ 
Sbjct: 9   EKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNRGAQFETFV 68

Query: 95  ESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDV 154
             RIRGAMLDELR  DW  R LRQ  R +++A+  + H  GR  +E ++ K   +D +  
Sbjct: 69  SQRIRGAMLDELRANDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKELKMDLEAY 128

Query: 155 RLGLEALQNQLCLSLE--AMQD---------SLAGEGGPQSDADPMQTAATQELIERVAS 203
           +  L+ +Q    L +E  A  D         S       +   DP++         ++  
Sbjct: 129 QSMLQEIQGCQLLYVEDFAKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLESGFRHQLVD 188

Query: 204 LIDELTPREKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLRREFRN 257
            I  L  R++L+L+LYY +ELN+RE   ++ +++ RV QLHSQA+ RLR + ++
Sbjct: 189 AISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAKLKD 242