Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

 Score = 67.0 bits (162), Expect = 5e-16
 Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 39/259 (15%)

Query: 34  AEKEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETY 93
           A +++++ H    +R +    K  L R V + +LI  G LGLM A+ KF+P+ G RF TY
Sbjct: 101 AARQSMIEH---NLRLVVSIAKGYLGRGVPMSDLIEEGNLGLMHAITKFEPERGFRFSTY 157

Query: 94  AESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQ----KATGL 149
           A   IR ++    R +    R++R  V  + E  Q +     RR  E D +    +  G+
Sbjct: 158 ATWWIRQSV---ERAVMTQARAIRLPVHVVRELQQVLR---ARRTLEGDAEFLAHRPDGV 211

Query: 150 DEKDVR--LG--LEALQNQLCL-----SLEA----------MQDSLAGEGGPQSDADPMQ 190
             +D+   LG  ++A+ + L L     SL+A          + D++A +    S +    
Sbjct: 212 RVEDIAALLGRDVQAVADLLALAEAPRSLDAGDARGDDGFTLADTVASDDEQSSPSGATH 271

Query: 191 TAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEV----MGITEGRVSQLHSQ 246
               + L+++    +D    RE+ VL   Y       ET EV    +G+T  RV Q+ ++
Sbjct: 272 AHEVERLLDQWVHALD---AREREVLEGRYGLHDREPETLEVLSVRLGLTRERVRQIQNE 328

Query: 247 ALGRLRREFRNHYGEHDAV 265
           AL ++RR+        DA+
Sbjct: 329 ALAKMRRQLARSGVGRDAL 347