Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 245 a.a., RNA polymerase sigma factor for flagellar operon from Sphingobium sp. HT1-2

 Score =  100 bits (250), Expect = 2e-26
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 4/217 (1%)

Query: 37  EAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYAES 96
           E + R Y P +R +A  +  ++   +E+ +L+  G + L+E+   F+ + G+ F +YA+ 
Sbjct: 25  EQLARRYMPLVRKIAWHVHGRVSSAIEVEDLLQIGMVALVESANSFEDR-GLGFASYAQL 83

Query: 97  RIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRL 156
           R+RGAM+D LRR     RS     ++L     ++E + GR   E ++    G+D  D R 
Sbjct: 84  RVRGAMIDHLRRHSTLCRSAMATRKKLAATRAKLEQKLGRAPLEAEMAAELGMDAADYRE 143

Query: 157 GLEALQNQLCLSL-EAMQDSLAGEGGPQSDADPMQTAATQELIERVASLIDELTPREKLV 215
             +  +     S+ E   D        +  AD +     + L   +A  I EL  RE LV
Sbjct: 144 AADGAEMVQHTSIDEVYSDQSMWFADVEDRADDIM--ERESLKGALAKCIGELPEREALV 201

Query: 216 LSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252
           L LY+ +ELN+ E  + + I   RV Q+   AL +LR
Sbjct: 202 LQLYFVEELNLEEIGQTLDIGAARVCQIKKSALDKLR 238