Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

 Score = 75.9 bits (185), Expect = 2e-18
 Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 10/208 (4%)

Query: 60  RNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAM---LDELRRLDWFPRSL 116
           R ++  +LI  G +GLM+A+ KF+ + G +F TYA   IR A+   + +  R    P  +
Sbjct: 463 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 522

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLS--LEAMQD 174
            + + +L    ++  HE GR  T E++ +   +  + VR  ++  +  + L   +   +D
Sbjct: 523 IETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEED 582

Query: 175 SLAGEGGPQSDA-DPMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVM 233
           S  G+     +A  P+  A    L E V  ++  LTPRE+ VL + +   +N   T E +
Sbjct: 583 SHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEV 642

Query: 234 G----ITEGRVSQLHSQALGRLRREFRN 257
           G    +T  R+ Q+ ++AL +L+   R+
Sbjct: 643 GQQFSVTRERIRQIEAKALRKLKHPSRS 670