Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  154 bits (388), Expect = 2e-42
 Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 9/230 (3%)

Query: 31  FAPAEKEA---IVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLG 87
           ++ A K+A   ++  YAP ++ +A  L A+LP NV++ +LI AG +GL+E   K+    G
Sbjct: 9   YSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKG 68

Query: 88  IRFETYAESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKAT 147
             FETYA  RIRGAMLDE+R+ DW PRS+ +  R + +AM+ +E  TGR A + ++    
Sbjct: 69  ASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAEL 128

Query: 148 GLDEKDVRLGL--EALQNQLCLSLEAMQDSL---AGEGGPQSDADPMQTAATQELIERVA 202
            L   D   G+  + L ++L    + +QD       E G     +P +    +     + 
Sbjct: 129 QLSLDDY-YGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187

Query: 203 SLIDELTPREKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252
             I  L  RE+LVL+LYY +ELN++E  EV+G++E RVSQLHSQ   RLR
Sbjct: 188 EAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLR 237