Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 60  RNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAM---LDELRRLDWFPRSL 116
           R ++  +LI  G +GLM+A+ KF+ + G +F TYA   IR A+   + +  R    P  +
Sbjct: 400 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 459

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLSLEAMQDSL 176
            + + +L+   +++  E GR  T E+L +   + E  +R  L+  +  + +      D  
Sbjct: 460 IETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDED 519

Query: 177 AGEGGPQSDA---DPMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVM 233
           +  G    D+    P+  A  + L E    ++  LT RE  VL + +  ++N   T E +
Sbjct: 520 SHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEV 579

Query: 234 G----ITEGRVSQLHSQALGRLRREFRNHY 259
           G    +T  R+ Q+ ++AL +LR   R+ +
Sbjct: 580 GKQFDVTRERIRQIEAKALRKLRHPTRSEH 609