Pairwise Alignments

Query, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 596 a.a., DNA polymerase III subunit gamma/tau from Magnetospirillum magneticum AMB-1

 Score =  267 bits (683), Expect = 8e-76
 Identities = 162/440 (36%), Positives = 227/440 (51%), Gaps = 16/440 (3%)

Query: 6   LTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCT 65
           L  +YRP  FA + GQE +   LS A +  R+A A++ +G RGVGKTT ARI A+ALNC 
Sbjct: 13  LARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTARIIARALNCV 72

Query: 66  T-----APTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120
                  PT +PC  CE CR + +  HVD++E+D AS  G++D + + E + Y P   R+
Sbjct: 73  GLDGKGGPTIDPCGQCEHCRAIAEDRHVDILEMDAASRTGVNDIREIIEGVRYRPTSARF 132

Query: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180
           K++IIDE HML+  AFNALLKTLEEPP  V FV ATTE  K PVT++SRCQ F   R+  
Sbjct: 133 KIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPVTVLSRCQRFDLRRVEM 192

Query: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
             L  H   +  +E  + +PAA++LIAR A GSVRD +SLL Q ++ G   +T    R +
Sbjct: 193 EVLAKHFESIAAKEQAEIEPAALKLIARAADGSVRDGLSLLDQAISHGAGAVTEAQVRDM 252

Query: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300
           LGLA +     L++A+         + + +    G D    L++++     L  L+   +
Sbjct: 253 LGLADRARVFDLLDAIMKGQVPAALDQITDQYAAGADPVVVLQDMLELVHWLTRLKVTPD 312

Query: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360
           AA   L   E E  +    +K    A +   WQM L+G      +  P  A E+ ++ LA
Sbjct: 313 AA-DQLGASETERVKGAEMSKTLSLAALTRAWQMLLKGLGETRNAPNPLQAAEMAVVRLA 371

Query: 361 MLPRLMP----VESLR---PSGGGASAPSGSAAEGPASGGAATIPTPGTQG---MQGTAP 410
               L      VE LR   P       P G  + G   GG A   +    G   + G A 
Sbjct: 372 YAAELPSPAELVEQLRANPPPPPAPRGPGGGGSGGGFGGGGADAVSNHHMGGGPVHGPAT 431

Query: 411 AAGMTPSPAAPATPAPSAAP 430
           A  + P+P A     P+  P
Sbjct: 432 ALKLQPAPVAETVTLPAMPP 451



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 36/254 (14%)

Query: 247 ELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASL 306
           E+  +  E++AA++   +     +L+ R  D    +R+       L +L QA      ++
Sbjct: 193 EVLAKHFESIAAKEQAEIEPAALKLIARAADGS--VRD------GLSLLDQAISHGAGAV 244

Query: 307 DLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQ---------RRVLTSLEPAMALELLLL 357
              E + R  LG A R   A +       ++GQ          +     +P + L+ +L 
Sbjct: 245 T--EAQVRDMLGLADR---ARVFDLLDAIMKGQVPAALDQITDQYAAGADPVVVLQDMLE 299

Query: 358 NLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGMQGTAPAAGMTPS 417
            +  L RL          G +       AE   +   A +    T+  Q      G T +
Sbjct: 300 LVHWLTRLKVTPDAADQLGASETERVKGAEMSKTLSLAAL----TRAWQMLLKGLGETRN 355

Query: 418 PAAPATPAPSAAPSPRVPWDDAAPAPRQ------TGIPPRPAPRMPEASPTAGSPAAPAQ 471
              P   A  A    R+ +    P+P +         PP PAPR P    + G       
Sbjct: 356 APNPLQAAEMAVV--RLAYAAELPSPAELVEQLRANPPPPPAPRGPGGGGSGG--GFGGG 411

Query: 472 GDDSDTAEHTPSGP 485
           G D+ +  H   GP
Sbjct: 412 GADAVSNHHMGGGP 425