Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  244 bits (622), Expect = 7e-69
 Identities = 139/296 (46%), Positives = 186/296 (62%), Gaps = 3/296 (1%)

Query: 117 IITDLSELVDKERRIEELSRLLGSEEGFAGMVGASSAMHRTFRLLERAAESDAPVLLLGA 176
           I+    +L   ++ I  L + L +   +  ++  S AM    +   + A S A VL+ G 
Sbjct: 115 IVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGE 174

Query: 177 SGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQGRFE 236
           SGTGKEL ARA+H   RR  GP++++NCAAL E+LLESELFGH +GAFTGA   RQG FE
Sbjct: 175 SGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE 234

Query: 237 AAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLGALVR 296
            A+ G L LDEIG++PL  Q KLLR+L+ +  ER+G +   +VD+RIIAATNR+L A+V+
Sbjct: 235 RANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294

Query: 297 AGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAALRHLV 356
            G FREDL +R+NVI + LP L  RREDI LLA  FL+  +  + R    + P A+  L 
Sbjct: 295 EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354

Query: 357 AYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPHIIDGTPEC-GGHALAATVAER 411
           A++WPGN+REL + +E A V+  G  I +E LPP I    P C  G    A V ER
Sbjct: 355 AWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI--RQPVCNAGEVKTAPVGER 408



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 469 VVTDSGPDHEMMSVDAHDRVMSLPGTSGEAGTPPPAMADAFPPTQRELREG---EERRQL 525
           VV +SGP   + S D   ++      +GE  T P          +R L+E     E+R +
Sbjct: 373 VVMNSGPI--IFSEDLPPQIRQPVCNAGEVKTAPVG--------ERNLKEEIKRVEKRII 422

Query: 526 LTALRRARGNISEAARLLGVYRGTVRNRMARYGID 560
           +  L +  GN +  A +LG+ R  +  ++  YGID
Sbjct: 423 MEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457