Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 592 a.a., putative sigma-54-interacting transcriptional activator from Escherichia coli BL21

 Score =  242 bits (617), Expect = 3e-68
 Identities = 128/255 (50%), Positives = 173/255 (67%), Gaps = 3/255 (1%)

Query: 147 MVGASSAMHRTFRLLERAAESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAA 206
           +VG    M +  RL+ R A S + V+++G SGTGKE+ ARA+H+L  RRN P++ +NCAA
Sbjct: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331

Query: 207 LNENLLESELFGHVRGAFTGA-VRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLET 265
           + E LLESELFG+V+GAFTGA    + G  +AA+ G LFLDEIGD+PL  Q KLLR +E 
Sbjct: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391

Query: 266 KRIERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDI 325
           + I  +G + P +VD+RII+ATN+NL   +  G+FREDL +R+NVIP+TLP L  R+EDI
Sbjct: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451

Query: 326 PLLAAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVRELRSAMEYAC-VVAGGGDID 384
            LL  +FL   T R G    G+ P  +  L  + WPGN+REL + MEY   VV  G  ID
Sbjct: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511

Query: 385 AEHLPPHII-DGTPE 398
           +  LPP+++ +GT E
Sbjct: 512 STLLPPNLLNNGTTE 526



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 9/39 (23%), Positives = 24/39 (61%)

Query: 12  IIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGR 50
           +ID +++G++ V  + R++ VN    +  G  ++ ++G+
Sbjct: 165 MIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGK 203