Pairwise Alignments

Query, 375 a.a., carbamoyl-phosphate synthase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 382 a.a., carbamoyl phosphate synthetase small subunit, glutamine amidotransferase from Escherichia coli BL21

 Score =  311 bits (797), Expect = 2e-89
 Identities = 169/376 (44%), Positives = 219/376 (58%), Gaps = 11/376 (2%)

Query: 3   ALLALEDGFVLEGRSFTGPGETGGEAIFNTGMTGYQEVLTDPSYAGQMVCMTYPLVGNYG 62
           ALL LEDG    GR+    G   GE +FNT MTGYQE+LTDPSY+ Q+V +TYP +GN G
Sbjct: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64

Query: 63  VTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRI 122
               D ES +VH +  ++++   + SN+R+   L  YLKRH ++ I  IDTR LTR LR 
Sbjct: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124

Query: 123 HGAMRG-VISTQETDPARLVERARALPSMEGQNLVTRVAPAAPYRWDGERPQAVTLEPGG 181
            GA  G +I+    D A  +E+ARA P + G +L   V  A  Y W     Q      GG
Sbjct: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSW----TQGSWTLTGG 180

Query: 182 CAWVGKGPRL----VVYDFGIKWNILRLLAQQGFDMLVVPPSFKAADVAAVGAQAVFLSN 237
                K   L    V YDFG K NILR+L  +G  + +VP    A DV  +    +FLSN
Sbjct: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240

Query: 238 GPGDPATLKDEIAEIAKLAQT-YPTAGICLGHQLLGHALGGRTMKLKFGHHGCNHPVKDL 296
           GPGDPA     I  I K  +T  P  GICLGHQLL  A G +T+K+KFGHHG NHPVKD+
Sbjct: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300

Query: 297 TTGRIEISSQNHGFCVDIDSL-TDVEITHVNLNDGTLEGFAHKTKPVIAVQHHPEASPGP 355
               + I++QNHGF VD  +L  ++ +TH +L DGTL+G     KP  + Q HPEASPGP
Sbjct: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360

Query: 356 NDSRYFFARFRNMVRE 371
           +D+   F  F  ++ +
Sbjct: 361 HDAAPLFDHFIELIEQ 376