Pairwise Alignments

Query, 577 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 557 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

 Score =  258 bits (658), Expect = 6e-73
 Identities = 179/509 (35%), Positives = 255/509 (50%), Gaps = 30/509 (5%)

Query: 43  DLAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLERLDPA 102
           +L P +  A I  G++    +Q  ++P +  G+D++ Q++TG+GKT AF LP+L  +DPA
Sbjct: 12  NLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCIDPA 71

Query: 103 EASTQALVLVPTRELALQVEHEARTLFEGT-GLRVAAVYGGVGYGKQNDALREGAHFVVG 161
           +   QAL+L PTRELALQV     T  +   G+ V AVYGG   G Q  A+R GA  VV 
Sbjct: 72  KREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVA 131

Query: 162 TPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATCLFSATY 221
           TPGR+ DHL R    L  +  L  DEAD ML +GF  D++ I + LP  R  T LFSAT 
Sbjct: 132 TPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR-QTVLFSATL 190

Query: 222 PPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKPMDKDRALIRLLEIENPSSAII 281
           P  +  +A   LR+PQ + +      V   +          K  A++ LLE+E+  + I+
Sbjct: 191 PQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIM 250

Query: 282 FCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVATDVAARGID 341
           F  TK     + + L+  GY A  L+ D++Q++RE+V++ L++  +  +VATDVAARG+D
Sbjct: 251 FVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLD 310

Query: 342 IPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIARHYRMDIAH 401
           +P ++HV   + P D ESY+HR GRTGRAG  G  + LV   ++  LQ I R     +A 
Sbjct: 311 VPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVAE 370

Query: 402 RPTPQDEDVARVVGDRLTALLEGAYRQCTGLQRERIQRFT-DVARTLAADEEQVVLLAML 460
              P  + V      +LT  L            + + R T D+  T  A      L A L
Sbjct: 371 VRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRA------LAAAL 424

Query: 461 LDEKYQQSLHAMPPRPRPQRASASRAVDSESDTAPRRRSRG----RRDDEGSTGGDERKT 516
           L             +    +A    A++ E    P    RG    R  D    G  ER+ 
Sbjct: 425 L------------RKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRA 472

Query: 517 ----APRTAPSRTTAGA-EGASAHEDTGA 540
               A   A  RT  GA +G +A    GA
Sbjct: 473 PVPLAEGRARCRTALGARDGIAAKNLLGA 501