Pairwise Alignments

Query, 577 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  284 bits (727), Expect = 7e-81
 Identities = 193/520 (37%), Positives = 272/520 (52%), Gaps = 24/520 (4%)

Query: 41  FADLAPR--LQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLER 98
           FADL  +  + EA    G++   P+QA  +P+L +GRD++  ++TGSGKT AF LPLL+ 
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 99  LDPAEASTQALVLVPTRELALQVEHEARTLFEG--TGLRVAAVYGGVGYGKQNDALREGA 156
           LDP   + Q LVL PTRELA+QV  EA T F     G+ V A+YGG  Y  Q  ALR+G 
Sbjct: 68  LDPELKAPQILVLAPTRELAVQVA-EAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126

Query: 157 HFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATCL 216
             VVGTPGR+LDHL R T+ L +L  L  DEAD ML +GF  D++ I   +P+    T L
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH-QTAL 185

Query: 217 FSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKPMDKDRALIRLLEIENP 276
           FSAT P  +  +   F++EPQ + +  S          +     M K+ AL+R LE E+ 
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245

Query: 277 SSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVATDVA 336
            +AIIF  TK     +   L+  GYN+  L+ D++Q+ REQ LERL++  +  L+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 337 ARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIARHYR 396
           ARG+D+  +S V+ Y+ P D ESY+HR GRTGRAG  G  +  V+  ++  L+ I R  +
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 397 MDIAHRPTPQDEDVARVVGDRLTALLEGAYRQCTGLQRERIQRFTDVARTLAADEE---Q 453
           + I     P  E + +    RL        +Q      ++ +      +  A  EE   +
Sbjct: 366 LTIPEVELPNAELLGK---RRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422

Query: 454 VVLLAMLLDEKYQQSLHAMPPRP-RPQRASASRAVDSESDTAPR-RRSRGRRDDEGSTGG 511
            +  A+L   + +++L   P  P RP+R    R      D  PR R  RG R D      
Sbjct: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDR-----DDRGPRDRNDRGPRGDREDRPR 477

Query: 512 DERKTAPRTAPSRTTAGA-EGASAHEDTGAGNMQTAQDGD 550
            ER+        R   G  +G       GA     A +GD
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGA----IANEGD 513