Pairwise Alignments

Query, 1223 a.a., sensory box histidine kinase/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  230 bits (587), Expect = 5e-64
 Identities = 138/352 (39%), Positives = 199/352 (56%), Gaps = 13/352 (3%)

Query: 819  LLQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIADVALTTEGN 878
            +L+DVT  +   E    ++D A   +  KS F+AN+SHE+RTP++ I+G+A +AL T+ +
Sbjct: 692  MLEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLD 751

Query: 879  PALLRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTTVRDALAPLAMQA 938
            P   ++Y   +Q   + LLG+IND+LDFS++EAG++ ++  E  L   + +    ++ +A
Sbjct: 752  PRQ-KDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKA 810

Query: 939  ERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQGTVHVDVSTGDGVTHDR 998
              KGL L   +  G+PL L GD LRL Q+L+N   NAVKFT  G + V V   + +  D 
Sbjct: 811  TAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPD- 869

Query: 999  ECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAISRHLVELQGGDIGV 1058
              L F + DTG G+  E+ A +F+SF+QAD S +R+  G+GLGLAIS+ L EL GG +GV
Sbjct: 870  VMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGV 929

Query: 1059 QSTPGEGSVFWFTLPLGDIHPARRTQRQRVDLDTRTPTTPLRILLAEDNELNREFLTIFL 1118
             S PG+GS FWFT  LG   P       R  L         R+L+ +DNE  R  L   L
Sbjct: 930  DSVPGQGSTFWFTARLGKGKP-------RAPLIPEAELQGRRMLVVDDNENARAVLVDML 982

Query: 1119 EEGGHSVVTACDGYEVLDILHREHVDL----VLMDIQMPRMNGMEATRSIRS 1166
                  V     G + LD +    +DL    V +D QMP M+G+E    I S
Sbjct: 983  SAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDGLEVAEQIHS 1034



 Score = 90.1 bits (222), Expect = 1e-21
 Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 2/117 (1%)

Query: 1099 LRILLAEDNELNREFLTIFLEEGGHSVVTACDGYEVLDILHREHVDLVLMDIQMPRMNGM 1158
            L++LL EDN+LN+E     L + G  V  A +G   ++       DL+LMD+QMP M+G+
Sbjct: 1110 LKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMPVMDGV 1169

Query: 1159 EATRSIRSSGEAWSTVPVIALTAHSMAGDRDRFIAEGMSDFVGKPVDRNELHAAIAR 1215
             ATR IR  G     +P+IA+TA++M  DRD+ +  GM+D + KP+D + + + I+R
Sbjct: 1170 TATREIRRLGHV--DLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISR 1224