Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1496 a.a., DNA-directed RNA polymerase subunit beta' from Magnetospirillum magneticum AMB-1

 Score =  827 bits (2135), Expect = 0.0
 Identities = 427/827 (51%), Positives = 576/827 (69%), Gaps = 24/827 (2%)

Query: 538  EVVAAYDAGVVALHARINVRMED--------GKVVRTTVGRILVWELLPHC--VPFSMVN 587
            E+  A     + LH +I  R +          ++V TT GR+++  +LP    VPFS++N
Sbjct: 637  EIEEALTEKTITLHTKIRARFDTVDSEGTPVTQIVDTTPGRMMLSVILPKNKNVPFSLIN 696

Query: 588  TTLTKKNIARLVSTAYRDAGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGL 647
              LTKK I  ++   YR  G K TVI  DR+  +GY  A +AG++    DL IP  K+ L
Sbjct: 697  RLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDDLVIPPEKETL 756

Query: 648  IETAQNEVDDIERQYRDGIITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGA 707
            +   + +  + E+QY+DG+IT+ EKYNKVVD W+K T DV++ M+++ISS +        
Sbjct: 757  VGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISSLV-------- 808

Query: 708  KEANSSFNSIYMMSTSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQY 767
                   NSIYMM+ SGARG+  QM+QLAGMRGLMAKPSGEIIETPI S+F+EGL+VL+Y
Sbjct: 809  --PGKQINSIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEY 866

Query: 768  FTSTHGARKGLADTALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIK 827
            F STHGARKGLADTALKTANSGYLTRRLVDV QD I+ E DCGT +G+ ++ + EGGE+ 
Sbjct: 867  FNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVSPVIEGGEVI 926

Query: 828  IPLADRALGRVLLYPVYDPETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDR 887
              LA+R LGR     + +P T +++     ++ E   +++    + +V+IRS LTC S+ 
Sbjct: 927  ASLAERILGRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIRSVLTCDSEE 986

Query: 888  GICTLCYGRDLARGHIVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEA 947
            G+C  CYGRDLARG  VN+GE VG+IAAQSIGEPGTQLTMRTFHIGG A R  E+SS EA
Sbjct: 987  GVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSIEA 1046

Query: 948  QHPGRVILSRVKAVRNRDGQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIR 1007
               G V +     V N  G  +VM ++ ++A++D   RER ++ +P G++LLV E +++ 
Sbjct: 1047 TFDGTVQVINRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKLLVDEAQKVT 1106

Query: 1008 KGQILAEWDPFNEPFVSEVDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEY----RTTN 1063
            KG  LAEWDP+  P ++E  GV  + D+ EG + +E +DEAT + ++ ++++    R  +
Sbjct: 1107 KGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVDWKQQPRGAD 1166

Query: 1064 FRPSISICDEHGEVKMRGNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDI 1123
             RP +++ DE GE  +  N + A Y + V AI+ V+N   + AGD++AR PRE+SKT+DI
Sbjct: 1167 LRPRVTLRDEKGEELLLANGLEARYFMSVDAILSVENNTKVNAGDVLARIPRESSKTRDI 1226

Query: 1124 VGGLPRVAELFEVRKPKDMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKH 1183
             GGLPRVAELFE RKPKD A++S+  G V +  + K KR+++V PE G+A EYL+PKGKH
Sbjct: 1227 TGGLPRVAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEEGDAIEYLIPKGKH 1286

Query: 1184 ITVTDGDFVEAGDLLTEGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEV 1243
            I+V +GD+V  GD L +G+P  HDIL+  G + LA+YL +EIQEVYR QGV I+DKHIEV
Sbjct: 1287 ISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRLQGVKINDKHIEV 1346

Query: 1244 IVRQMLKKVTVLDPGGTTFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLT 1303
            IVRQML+KV + DPG TT LVGEQVD+ EF +EN++A+ E   PA+  P++ GIT+ASL 
Sbjct: 1347 IVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGTPVLQGITKASLQ 1406

Query: 1304 TSSFISAASFQETTKVLTEASLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            T SFISAASFQETT+VLTEA++ GK+D L+GLKENVIVGRLIPAGTG
Sbjct: 1407 THSFISAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTG 1453



 Score =  819 bits (2116), Expect = 0.0
 Identities = 387/514 (75%), Positives = 464/514 (90%)

Query: 16  IANIRNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYEC 75
           ++  ++   I+I+IASPE IR WSYGE+KKPETINYRTFKPERDGLFCA+IFGP+KDYEC
Sbjct: 11  VSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYEC 70

Query: 76  NCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDM 135
            CGKYKRMK+RGI+CEKCGVEV  +KVRRERMGHIELA+PVAHIWFLK+LPS+IG L DM
Sbjct: 71  LCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLCDM 130

Query: 136 TMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLL 195
           T+ DLE++LYF++Y+V++PG T L   ++++E+QY++ +D YGEDA T  +GAEA+R +L
Sbjct: 131 TLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAKIGAEAIRDML 190

Query: 196 EELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPEL 255
             ++LE  + QL+ + + T S+ K+KKL KR+K+VEAF+ES ++PEWM++EVIPVIPPEL
Sbjct: 191 TVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMILEVIPVIPPEL 250

Query: 256 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDN 315
           RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP+II+RNEKRMLQEAVDALFDN
Sbjct: 251 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRMLQEAVDALFDN 310

Query: 316 GRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLP 375
           GRRGRAITG N RPLKSLSDM+KGKQGRFRQNLLGKRVDYSGRSVIVVGP+LKLHQCGLP
Sbjct: 311 GRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLP 370

Query: 376 KKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTL 435
           KKMALELFKPF+YS+LE  G+A+TIK+AK+MVE+E   VWDILEEV+RE+P+MLNRAPTL
Sbjct: 371 KKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTL 430

Query: 436 HRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNN 495
           HRLGIQ+FEP+L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNN
Sbjct: 431 HRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNN 490

Query: 496 ILSPANGSPVIVPSQDIVLGLYYMTVDRSFEKGE 529
           ILSPANG P+IVPSQDIVLG+YY+T++R    G+
Sbjct: 491 ILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQ 524