Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Serratia liquefaciens MT49

 Score = 1644 bits (4258), Expect = 0.0
 Identities = 815/1348 (60%), Positives = 1047/1348 (77%), Gaps = 23/1348 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCA+IFGPVKDYEC CGKYKR+
Sbjct: 19   AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRRERMGHIELA+P AHIWFLK+LPS+IG LLDM + D+E+V
Sbjct: 79   KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF+SY+V++ G TNL + Q+++E+QYL  ++ +G D     MGAEA+++LL+ ++LE  
Sbjct: 139  LYFESYVVVEGGMTNLERRQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKNMDLEAE 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
              QLREE   T S+TK+KKLTKR+K++EAF++S NKPEWM++ V+PV+PP+LRPLVPLDG
Sbjct: 198  CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQEAVDAL DNGRRGRAIT
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELF
Sbjct: 318  GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFIY +LE RGLA+TIK+AKKMVEREE VVWDIL+EV+RE+P++LNRAPTLHRLGIQ+F
Sbjct: 378  KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPANG 
Sbjct: 438  EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMED--- 560
            P+IVPSQD+VLGLYYMT D    KGE M    P E    Y AG+ +LHAR+ VR+ +   
Sbjct: 498  PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAGLASLHARVKVRITEEIK 557

Query: 561  ---------GKVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611
                       ++ TTVGR ++W ++P  +P+S+VN  L KK I+++++T YR  G K T
Sbjct: 558  NTEGESVHQTSIIDTTVGRAILWMIVPRGLPYSIVNQPLGKKAISKMLNTCYRILGLKPT 617

Query: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671
            VI  D++   G+ YA R+G ++ + D+ IP+ K  +IE A+ EV +I+ Q++ G++T  E
Sbjct: 618  VIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETEVAEIQEQFQSGLVTAGE 677

Query: 672  KYNKVVDVWTKATQDVSNEMIREIS-SDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQD 730
            +YNKV+D+W  A + V+  M+  +S  D+V   R G  E   SFNSI+MM+ SGARG+  
Sbjct: 678  RYNKVIDIWAAANERVAKAMMENLSVEDVVN--RDGVVEQQVSFNSIFMMADSGARGSAA 735

Query: 731  QMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGY 790
            Q+RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTALKTANSGY
Sbjct: 736  QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795

Query: 791  LTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRD 850
            LTRRLVDV QD++V+E DCGT +GI +T + EGG++K PL +R LGRV    V  P T D
Sbjct: 796  LTRRLVDVAQDLVVTEDDCGTHNGIMMTPVIEGGDVKEPLRERVLGRVTAEDVIKPGTAD 855

Query: 851  LLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETV 910
            +L P NTL++E    +L E  V SV +RS ++C++D G+C  CYGRDLARGHI+N GE +
Sbjct: 856  ILVPRNTLLNEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYGRDLARGHIINKGEAI 915

Query: 911  GIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMV 970
            G+IAAQSIGEPGTQLTMRTFHIGG ASR    SS + ++ G + LS VK V N  G+ ++
Sbjct: 916  GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKLSNVKFVMNAAGKLVI 975

Query: 971  MGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVI 1030
              ++ +L ++D+ GR +E Y +P G+ +   +G E+  G+ +A WDP   P ++EV G I
Sbjct: 976  TSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANWDPHTMPVITEVSGFI 1035

Query: 1031 RFSDIVEGKTFQEKMDEATRMTTQTIIE--YRT---TNFRPSISICDEHG-EVKMRGNNI 1084
            RF+D+V+G+T   + DE T +++  +++   RT    + RP++ I D  G +V + G ++
Sbjct: 1036 RFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKIVDAKGDDVLIPGTDM 1095

Query: 1085 PATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAV 1144
            PA Y LP  AI+ +++G  + AGD +AR P+E+  TKDI GGLPRVA+LFE R+PK+ A+
Sbjct: 1096 PAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155

Query: 1145 VSEIAGIVTYAGETKGKRKLVVTPEIG-EAKEYLVPKGKHITVTDGDFVEAGDLLTEGHP 1203
            ++EI+GI+++  ETKGKR+LV++P  G +A E ++PK + + V +G+ VE GD++++G  
Sbjct: 1156 LAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPE 1215

Query: 1204 ELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFL 1263
              HDILR RG   + RY+T+E+QEVYR QGV I+DKHIEVIVRQML+K T++  GGT FL
Sbjct: 1216 SPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAGGTEFL 1275

Query: 1264 VGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEA 1323
             GEQ +    ++ N +   EG+  AT    +LGIT+ASL T SFISAASFQETT+VLTEA
Sbjct: 1276 EGEQAEVSRVKIANRQLAAEGKIEATFSRDLLGITKASLATESFISAASFQETTRVLTEA 1335

Query: 1324 SLRGKMDYLRGLKENVIVGRLIPAGTGY 1351
            ++ GK D LRGLKENVIVGRLIPAGTGY
Sbjct: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGY 1363