Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' (NCBI) from Escherichia coli BW25113

 Score = 1639 bits (4244), Expect = 0.0
 Identities = 810/1347 (60%), Positives = 1045/1347 (77%), Gaps = 21/1347 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCA+IFGPVKDYEC CGKYKR+
Sbjct: 19   AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRRERMGHIELA+P AHIWFLK+LPS+IG LLDM + D+E+V
Sbjct: 79   KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF+SY+V++ G TNL + Q+++E+QYL  ++ +G D     MGAEA+++LL+ ++LE+ 
Sbjct: 139  LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDLEQE 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
              QLREE   T S+TK+KKLTKR+K++EAF++S NKPEWM++ V+PV+PP+LRPLVPLDG
Sbjct: 198  CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQEAVDAL DNGRRGRAIT
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELF
Sbjct: 318  GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFIY +LE RGLA+TIK+AKKMVEREE VVWDIL+EV+RE+P++LNRAPTLHRLGIQ+F
Sbjct: 378  KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPANG 
Sbjct: 438  EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMED--- 560
            P+IVPSQD+VLGLYYMT D    KGE M    P E    Y +G+ +LHAR+ VR+ +   
Sbjct: 498  PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557

Query: 561  ---GKVVR------TTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611
               G++V       TTVGR ++W ++P  +P+S+VN  L KK I+++++T YR  G K T
Sbjct: 558  DANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPT 617

Query: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671
            VI  D++   G+ YA R+G ++ + D+ IP  K  +I  A+ EV +I+ Q++ G++T  E
Sbjct: 618  VIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE 677

Query: 672  KYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQ 731
            +YNKV+D+W  A   VS  M+  + ++ V + R G +E   SFNSIYMM+ SGARG+  Q
Sbjct: 678  RYNKVIDIWAAANDRVSKAMMDNLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQ 736

Query: 732  MRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYL 791
            +RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTALKTANSGYL
Sbjct: 737  IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796

Query: 792  TRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDL 851
            TRRLVDV QD++V+E DCGT +GI +T + EGG++K PL DR LGRV    V  P T D+
Sbjct: 797  TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856

Query: 852  LFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVG 911
            L P NTL+ E    +L E  V +V +RS ++C +D G+C  CYGRDLARGHI+N GE +G
Sbjct: 857  LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916

Query: 912  IIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVM 971
            +IAAQSIGEPGTQLTMRTFHIGG ASR    SS + ++ G + LS VK+V N  G+ ++ 
Sbjct: 917  VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976

Query: 972  GKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIR 1031
             ++ +L ++D+ GR +E Y +P G+ L   +GE++  G+ +A WDP   P ++EV G +R
Sbjct: 977  SRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036

Query: 1032 FSDIVEGKTFQEKMDEATRMTTQTIIE--YRTT---NFRPSISICDEHG-EVKMRGNNIP 1085
            F+D+++G+T   + DE T +++  +++   RT    + RP++ I D  G +V + G ++P
Sbjct: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096

Query: 1086 ATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVV 1145
            A Y LP  AI+ +++G  + +GD +AR P+E+  TKDI GGLPRVA+LFE R+PK+ A++
Sbjct: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156

Query: 1146 SEIAGIVTYAGETKGKRKLVVTPEIG-EAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPE 1204
            +EI+GIV++  ETKGKR+LV+TP  G +  E ++PK + + V +G+ VE GD++++G   
Sbjct: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216

Query: 1205 LHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLV 1264
             HDILR RG   + RY+ +E+Q+VYR QGV I+DKHIEVIVRQML+K T+++ G + FL 
Sbjct: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276

Query: 1265 GEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEAS 1324
            GEQV+    ++ N      G+  AT    +LGIT+ASL T SFISAASFQETT+VLTEA+
Sbjct: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336

Query: 1325 LRGKMDYLRGLKENVIVGRLIPAGTGY 1351
            + GK D LRGLKENVIVGRLIPAGTGY
Sbjct: 1337 VAGKRDELRGLKENVIVGRLIPAGTGY 1363