Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1406 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Kangiella aquimarina DSM 16071

 Score = 1645 bits (4259), Expect = 0.0
 Identities = 817/1373 (59%), Positives = 1060/1373 (77%), Gaps = 29/1373 (2%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYEC CGKYKR+
Sbjct: 19   AIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRGI+CEKCGVEV  +KVRRERMGHI+LA PVAHIWFLK+LPS+IG LLDMT+ D+E++
Sbjct: 79   KHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSLPSRIGMLLDMTLRDIERI 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF++++V +PG T L   Q++SE+ YL  ++ +G+D     MGAEA+ +LL+ ++L+E 
Sbjct: 139  LYFEAFVVTEPGMTTLEAGQLLSEEGYLDALEEFGDD-FEAKMGAEAISALLDLIDLKEE 197

Query: 204  RVQLREES-QATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLD 262
              ++REE   +T S+TK KKL+KRLK++EAFL+S N P+WM+M V+PV+PP+LRPLVPLD
Sbjct: 198  AQRIREEEIPSTNSETKLKKLSKRLKLLEAFLDSGNDPQWMIMTVLPVLPPDLRPLVPLD 257

Query: 263  GGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAI 322
            GGRFATSDLNDLYRRVINRNNRL+RL++L APDII+RNEKRMLQE+VDAL DNGRRGRAI
Sbjct: 258  GGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRMLQESVDALLDNGRRGRAI 317

Query: 323  TGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALEL 382
            TG+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP LKLHQCGLPKKMALEL
Sbjct: 318  TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKKMALEL 377

Query: 383  FKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQS 442
            FKPFIYS+LE RGLA+TIK+AKKMVEREE VVWDILEEV+RE+P++LNRAPTLHRLGIQ+
Sbjct: 378  FKPFIYSKLELRGLATTIKAAKKMVEREEPVVWDILEEVIREHPVLLNRAPTLHRLGIQA 437

Query: 443  FEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANG 502
            FEP+L+EGKAIQLHPLVC AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPANG
Sbjct: 438  FEPVLIEGKAIQLHPLVCVAYNADFDGDQMAVHVPLTIEAQLEARALMMSTNNILSPANG 497

Query: 503  SPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM---- 558
             P+IVP+QD+VLGLYY+T DR   KGE M F    EV  AY  G+V LHA++ VR+    
Sbjct: 498  EPIIVPTQDVVLGLYYLTRDRVNAKGEGMIFSDADEVQRAYANGIVDLHAKVKVRLPMVD 557

Query: 559  --EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKA 610
              E+G      ++  TTVGR L+W ++P  + F +VN  +TKK I++LV+T YR+ G KA
Sbjct: 558  IDEEGNKTARIELAETTVGRSLLWGIVPDGISFDLVNKPMTKKAISKLVNTCYRECGLKA 617

Query: 611  TVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRT 670
            TVI  D+L   G+ YATR+G ++ ++D++IP  K  +IE A+ EV +I+ Q+  G++T+ 
Sbjct: 618  TVIFADQLMYTGFGYATRSGASVGIEDMSIPEAKAEIIEAAEKEVAEIQEQFNSGLVTQG 677

Query: 671  EKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQD 730
            E+YNKVVD+W+   + V+  M+  I ++ V D + G      SFNSI+MM+ SGARG+  
Sbjct: 678  ERYNKVVDIWSHTNEKVAKAMMDFIGTEEVVD-KEGNTVRQPSFNSIFMMADSGARGSAA 736

Query: 731  QMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGY 790
            Q+RQLAGMRGLMAKP G IIE PIT++FREGL V QYF STHGARKGLADTALKTANSGY
Sbjct: 737  QIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGARKGLADTALKTANSGY 796

Query: 791  LTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRD 850
            LTRRLVDV QD++++EHDCGT +G+ ++ + EGG++  PL++R LGRV+   VY P T D
Sbjct: 797  LTRRLVDVAQDMVITEHDCGTEEGVYMSPLIEGGDVVEPLSERVLGRVVAEHVYVPGTDD 856

Query: 851  LLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETV 910
            +L    TL+DE   + L +  V  V +RS +TCQ+  G+C  CYGRDLARGHI+N GE V
Sbjct: 857  ILAEAGTLLDEKWVETLEQNSVDQVKVRSVITCQTRNGVCAACYGRDLARGHIINQGEAV 916

Query: 911  GIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMV 970
            G+IAAQSIGEPGTQLTMRTFHIGG ASR    ++ + ++ G + L   K V  +DG+ ++
Sbjct: 917  GVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGEIRLKNAKTVERQDGKLVI 976

Query: 971  MGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVI 1030
            + +S +L ++D+ GRERE+Y +P G+ L   EGE+ + G I+A WDP   P ++E+DG I
Sbjct: 977  VSRSSELNVIDEYGRERERYKVPYGAVLSAKEGEQAKGGDIVANWDPHTHPIIAELDGKI 1036

Query: 1031 RFSDIVEGKTFQEKMDEATRMTTQTIIE------YRTTNFRPSISICDEHG-EVKMRGNN 1083
            +F D++EG   + + DE T +++  I E       ++++ +P+I + D+ G ++ + G  
Sbjct: 1037 QFVDMIEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKPAIKLIDKKGKDLYIPGTE 1096

Query: 1084 IPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMA 1143
            +PA Y LP  AI+ +++G ++  GD IAR P+E+SKTKDI GGLPRVA+LFE RKPK+ A
Sbjct: 1097 MPAVYFLPTNAIVSLEDGAEVNIGDAIARIPQESSKTKDITGGLPRVADLFEARKPKEPA 1156

Query: 1144 VVSEIAGIVTYAGETKGKRKLVVTPEI-GEAKEYLVPKGKHITVTDGDFVEAGDLLTEGH 1202
            +++EI+G V++  ETKGKR+LV+TP+  G+  E L+PK + + V +G+ VE G+++++G 
Sbjct: 1157 ILAEISGTVSFGKETKGKRRLVITPQDGGDTYEELIPKWRQLNVFEGEKVEKGEVVSDGA 1216

Query: 1203 PELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTF 1262
               HDILR +G   LARY+ +E+QEVYR QGV I+DKHIEVI+RQML+K  V DPG + F
Sbjct: 1217 DNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVIIRQMLRKCIVTDPGDSLF 1276

Query: 1263 LVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTE 1322
            L G+Q++      EN + +  G+ P   E +++GIT+ASL T SFISAASFQETT+VLTE
Sbjct: 1277 LKGDQMEVVRVLEENDKLVEAGKDPVHFERVLMGITKASLATESFISAASFQETTRVLTE 1336

Query: 1323 ASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERPDKFLEDL 1375
            A++ GK D LRGLKENVIVGRLIPAGTG   +         +R+R +  +EDL
Sbjct: 1337 AAVNGKTDDLRGLKENVIVGRLIPAGTGLTYHAE------RRRKRAESMVEDL 1383