Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1437 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 1342 bits (3474), Expect = 0.0
 Identities = 714/1427 (50%), Positives = 964/1427 (67%), Gaps = 107/1427 (7%)

Query: 25   IQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84
            + I++ASPE+I + S+GEV +PETINYRT+KPE  GLFC +IFGPVKD+EC+CGKYKR++
Sbjct: 16   VTISLASPESILDSSHGEVTQPETINYRTYKPEMGGLFCERIFGPVKDWECHCGKYKRIR 75

Query: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144
            ++GI+C++CGVEV   KVRRERMGHIEL  PVAHIW+ K+LP+KIG LL +    L++++
Sbjct: 76   YKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKIGYLLGLPTKKLDQIV 135

Query: 145  YFDSYIVLDPG---STNLTKMQVISEDQYLQVIDHYGED----------ALTVGMGAEAV 191
            Y++ Y V++PG      L  +  ++ED+YL ++D   ++               MGAEA+
Sbjct: 136  YYERYAVINPGIKAEDGLQYLDFLTEDEYLDIMDKLPKENQMLDDDDPNKFIAKMGAEAI 195

Query: 192  RSLLEELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESN----NKPEWMVMEV 247
              LL  L+L++L   LR ++    SQ +K +  KRLK+VEAF ++     N+PEWMV+ +
Sbjct: 196  EMLLSRLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDARTRIENRPEWMVVRM 255

Query: 248  IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQE 307
            +PVIPPELRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ AP++I+RNEKRMLQE
Sbjct: 256  VPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEVILRNEKRMLQE 315

Query: 308  AVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKL 367
            AVD+LFDN R+  A+     R LKSLSDM+KGKQGRFRQNLLGKRVDYSGRSVIVVGP+L
Sbjct: 316  AVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEL 375

Query: 368  KLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPI 427
            KLH+CGLPK MA ELFKPFI  +L +RG+  T+KSAKK+V+R++ VVWDILE V++ +P+
Sbjct: 376  KLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDPVVWDILENVLKGHPV 435

Query: 428  MLNRAPTLHRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECR 487
            +LNRAPTLHRLGIQ+F+P L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPL  EA +E  
Sbjct: 436  LLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLGHEAILEAS 495

Query: 488  VLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVDRSFEK-----GENMSFCAPWEVVAA 542
             LM+S++NIL+PANG+P+ VPSQD+VLGLYY+T  R   +     GE M+F    +V+ A
Sbjct: 496  TLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRRSTEEEPVPGEGMTFYGEEDVIIA 555

Query: 543  YDAGVVALHA----RINVRMEDG----KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKN 594
             +  V++ HA    ++ VR E+G    K+V T  GR++  + +P  V +  VN  LTKK 
Sbjct: 556  LNEKVISQHAYIKCKVKVRDENGELVDKIVETVAGRLIFNQFVPEEVGY--VNELLTKKK 613

Query: 595  IARLVSTAYRDAGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNE 654
            + ++++   +  G   +    D +K +G++ A   G+++ + D+ IPS K  LI  A++E
Sbjct: 614  LQQIIAEVVKICGIARSAQFLDDIKHLGFQMAYAGGLSMGLNDVIIPSDKDPLITKAKDE 673

Query: 655  VDDIERQYRDGIITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSF 714
            VD +   Y  G+IT  E+YN+V+D+WT+   +++N +++++  D               F
Sbjct: 674  VDQVWNNYLMGLITDNERYNQVIDIWTRTNSNLTNILMKQMEED------------KQGF 721

Query: 715  NSIYMMSTSGARGNQDQMRQLAGMRGLMAKPS-------GEIIETPITSSFREGLSVLQY 767
            N+IYMM  SGARG+++Q+RQL GMRGLMAKP        GEIIE PI S+F+EGL VL+Y
Sbjct: 722  NAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLEY 781

Query: 768  FTSTHGARKGLADTALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIK 827
            F STHGARKGLADTALKTA++GYLTRRLVDV QDVIVSE DCGT+ G+ +  +K+  EI 
Sbjct: 782  FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVSEEDCGTLRGLVVQALKDNDEIV 841

Query: 828  IPLADRALGRVLLYPVYDPETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDR 887
             PL++R +GRV ++ V DP T +++      + + +A+ + E  V  V IRS LTC+S R
Sbjct: 842  EPLSERIVGRVSVHDVIDPITDEVIIQSGEEITDELARKVDESAVEEVEIRSVLTCESRR 901

Query: 888  GICTLCYGRDLARGHIVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEA 947
            G+CT CYGR+L  G +V  GE+VG+IAAQSIGEPGTQLT+RTFH+GGTAS     +S  A
Sbjct: 902  GVCTKCYGRNLTTGSVVQNGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNISVEASINA 961

Query: 948  QHPGRVILS---RVKAVRNRDGQ--YMVMGKSGQLAIVDDQ-GREREKYTLPNGSRLLVT 1001
            +  G V      R     N+DG    +VMG+SG++ I D + G+      +P G+ L V 
Sbjct: 962  KFEGVVEFEEEFRFINTTNKDGDPVAVVMGRSGEIKINDAKSGKTLASNHVPYGAILNVK 1021

Query: 1002 EGEEIRKGQILAEWDPFNEPFVSEVDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYRT 1061
            +G++I KG  L  WDP+N   +SE DG + F  I+EG TF+E  D+ T    + II+ + 
Sbjct: 1022 DGQKIGKGDSLCTWDPYNAVILSEFDGEVSFESIIEGVTFKEVADDQTGYKEKVIIDTKD 1081

Query: 1062 TNFRPSISICDEHGEVKMRGNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTK 1121
                P++ + +   E K        +Y++PVGA + V+ G  ++AG I+ + PR   KT+
Sbjct: 1082 KTKNPAV-VVNYGDETK--------SYNIPVGAHLAVEEGDKVKAGQILVKIPRSVGKTR 1132

Query: 1122 DIVGGLPRVAELFEVRKPKDMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKG 1181
            DI GGLPRV ELFE R P + AVVSEI G+VTY G  +G R++ +  + G  K Y+V   
Sbjct: 1133 DITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIFIESKDGVKKRYMVSLS 1192

Query: 1182 KHITVTDGDFVEAGDLLTEGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHI 1241
            KHI V + DF+ AG+ L++G    +DIL  +G   +  YL +EIQEVYR QGV I+DKHI
Sbjct: 1193 KHILVQENDFIRAGEPLSDGAITPNDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHI 1252

Query: 1242 EVIVRQMLKKVTVLDPGGTTFLVGEQVDKGEFRVENTRAM--------GEGRT------- 1286
            EVIV QM++KV +LD G T FL G+ VDK  FR EN   +        G+  T       
Sbjct: 1253 EVIVSQMMQKVEILDAGDTGFLQGQIVDKWAFREENDNILDKKVVMDAGDSSTLKAGMII 1312

Query: 1287 --------------------------PATAEPLVLGITQASLTTSSFISAASFQETTKVL 1320
                                       A ++P + GIT ASL T SFISAASFQETTKVL
Sbjct: 1313 TSRRLRDENSSLKRKDLKLVQVRDAETAVSKPTLQGITAASLGTESFISAASFQETTKVL 1372

Query: 1321 TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRER 1367
            +EA++RGK D L GLKENVIVG LIPAGTG R++ +  +   E+ E+
Sbjct: 1373 SEAAIRGKRDELLGLKENVIVGHLIPAGTGQRDFQHIIVGSKEEYEK 1419