Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1398 a.a., DNA-directed RNA polymerase subunit beta' from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1581 bits (4093), Expect = 0.0
 Identities = 813/1382 (58%), Positives = 1031/1382 (74%), Gaps = 35/1382 (2%)

Query: 25   IQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84
            I+I +ASPE IR WS+GE+KKPETINYRTFKPERDGLFCA+IFGP KDYEC CGKYKRMK
Sbjct: 21   IKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPTKDYECLCGKYKRMK 80

Query: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144
            ++GI+CEKCGVEV  ++VRRERMGHI+LAAPVAHIWFLK+LPS+I  +LDM + D+E+VL
Sbjct: 81   YKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKSLPSRISLMLDMALKDVERVL 140

Query: 145  YFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEELR 204
            YF++YIV +PG T L + Q+++ED++ +  + +G+D  T  +GAEAVR+LL  ++L    
Sbjct: 141  YFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGDDGFTAEIGAEAVRNLLMGIDLNAEA 200

Query: 205  VQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDGG 264
             + R E     S+ K KK +KRLK++EAFLES NKPEWM++ ++PVIPPELRPLVPLDGG
Sbjct: 201  EKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMILTIVPVIPPELRPLVPLDGG 260

Query: 265  RFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG 324
            RFATSDLNDLYRRVINRNNRLKRLMEL APDIIIRNEKRMLQE+VDALFDNGRRGR ITG
Sbjct: 261  RFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQESVDALFDNGRRGRVITG 320

Query: 325  TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK 384
             N RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP+LKLH+CGLPKKMALELFK
Sbjct: 321  ANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVGPELKLHECGLPKKMALELFK 380

Query: 385  PFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSFE 444
            PFIY+ L+ +GL+ T+K +K+MVERE+  VWDIL+EV+RE+P++LNRAPTLHRLGIQ+FE
Sbjct: 381  PFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIREHPVLLNRAPTLHRLGIQAFE 440

Query: 445  PLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSP 504
            P L+EGKAI+LHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNNILSPANG P
Sbjct: 441  PKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKP 500

Query: 505  VIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM------ 558
            +IVPSQDIVLGLYY+++ +  E GE   F    E+ AA DA VV LH RI  R       
Sbjct: 501  IIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALDAKVVTLHTRIKARWTEQDAE 560

Query: 559  --EDGKVVRTTVGRILVWELLPH--CVPFSMVNTTLTKKNIARLVSTAYRDAGTKATVIL 614
              E  KV+ TT GR+ +  LLP    V + ++   LTKK I  L+   YR  G KATVI 
Sbjct: 561  GNEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTKKEIGNLIDVVYRHCGQKATVIF 620

Query: 615  CDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTEKYN 674
             D++  +G+  A +AG++    D+ IP+ K  L+   + +V++ E+QY DG+ITR EKYN
Sbjct: 621  ADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETRTQVEEYEQQYADGLITRGEKYN 680

Query: 675  KVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQMRQ 734
            KVVD W+KAT  +++ M+ EI+      PR   +  N   NS++MM+ SGARG+Q QM+Q
Sbjct: 681  KVVDAWSKATDRIADAMMGEIA-----QPRVLIEGENPDINSVFMMANSGARGSQAQMKQ 735

Query: 735  LAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRR 794
            L GMRGLMAKPSGEIIETPITS+F+EGL+VL+YF STHGARKGLADTALKTANSGYLTRR
Sbjct: 736  LGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRR 795

Query: 795  LVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDLLFP 854
            LVDV QD IV+E DCG+  GI L  + EGG++ + L  R LGR     + +P T  +LFP
Sbjct: 796  LVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQRILGRYAAEDIKEPGTDTVLFP 855

Query: 855  ENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVGIIA 914
             +T + E VA+ +    V SV +RSALTC+++ GIC  CYGRDLARG  VNIGE VG+IA
Sbjct: 856  ADTYLVEEVAEAVEAAGVQSVKVRSALTCEAEAGICAHCYGRDLARGTNVNIGEAVGVIA 915

Query: 915  AQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVMGKS 974
            AQSIGEPGTQLTMRTFHIGGTA +  E S  EA + G   ++    V    G  + M ++
Sbjct: 916  AQSIGEPGTQLTMRTFHIGGTA-QVAETSFMEATNAGTAKVTGPTVVA-AHGDLVAMSRN 973

Query: 975  GQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIRFSD 1034
              + +V D G++RE +  P G+R+ V +G+E++K Q LAEWDP+  P ++EV GV+RF D
Sbjct: 974  VIVTVVVD-GKDRETHKAPYGARIRVKDGDEVKKNQRLAEWDPYTTPILTEVGGVVRFED 1032

Query: 1035 IVEGKTFQEKMDEATRMTTQTIIEYRT----TNFRPSISICDEHGEVKMRGNNIPATYSL 1090
            +VEG + +E+ DEAT +  + + ++R     ++ RP++ +       K+   +  A Y L
Sbjct: 1033 LVEGLSVKEETDEATGIAQRVVSDWRASPRGSDLRPAMGVTLGDAYAKLSSGS-DARYLL 1091

Query: 1091 PVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAG 1150
            PVGA++ V NG +++ G+IIAR P E +KT+DI GGLPRVAELFE R+PKD AV++E+ G
Sbjct: 1092 PVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRPKDCAVIAEMDG 1151

Query: 1151 IVTYAGETKGKRKLVVTPE------IGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPE 1204
             V +  + K KR++ +TPE       GE  E+L+PKGKHI+V DGD ++ GD + +G+P+
Sbjct: 1152 RVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKGKHISVHDGDLIQKGDYIIDGNPD 1211

Query: 1205 LHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLV 1264
             HD+LR +G + LA YL +E+QEVYR QGV I+DKHIEVIVRQML+KV VLD G TT + 
Sbjct: 1212 PHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVEVLDSGETTLIR 1271

Query: 1265 GEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEAS 1324
            G+ V+  E  +EN +    G   AT +P++LGIT+ASL T SFISAASFQETT+VLT+AS
Sbjct: 1272 GDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKASLQTRSFISAASFQETTRVLTDAS 1331

Query: 1325 LRGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERPDKFLEDLEE--NPLLV 1382
            + GK D L GLKENVIVGRLIPAGTG   Y+ +  L     ER  +    LEE   PL  
Sbjct: 1332 VHGKKDMLEGLKENVIVGRLIPAGTG--AYLRS--LQKIANERDAELTSALEEAIEPLPA 1387

Query: 1383 DI 1384
            D+
Sbjct: 1388 DL 1389