Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

 Score = 1599 bits (4141), Expect = 0.0
 Identities = 813/1370 (59%), Positives = 1037/1370 (75%), Gaps = 27/1370 (1%)

Query: 20   RNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGK 79
            ++  +I+I+IASPE I  WSYGE+KKPETINYRTFKPERDGLFCA+IFGP+KDYEC CGK
Sbjct: 16   QHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGK 75

Query: 80   YKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMAD 139
            YKRMK++GI+CEKCGVEV  S+VRRERMGHIELAAPVAHIWFLK+LPS+I TLLDMT+ D
Sbjct: 76   YKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRISTLLDMTLKD 135

Query: 140  LEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELN 199
            +E+VLYF++YIV +PG T+L + Q++SE++Y+  +D +GED  T  +GAEA+  +L  +N
Sbjct: 136  VERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASMN 195

Query: 200  LEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLV 259
            LE++   LR E   T S  K+KK  KRLKIVE F+ES N+PEWM+M+V+PVIPP+LRPLV
Sbjct: 196  LEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPLV 255

Query: 260  PLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRG 319
            PLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP IIIRNEKRMLQE+VDALFDNGRRG
Sbjct: 256  PLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQESVDALFDNGRRG 315

Query: 320  RAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMA 379
            R ITG N RPLKSLSDM+KGKQGRFRQNLLGKRVDYSGRSVIV GP+LKLHQCGLPKKMA
Sbjct: 316  RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKLHQCGLPKKMA 375

Query: 380  LELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLG 439
            LELFKPFIY+ L+ +G +ST+K AKK+VE+E+  VWDIL+EV+RE+P++LNRAPTLHRLG
Sbjct: 376  LELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHPVLLNRAPTLHRLG 435

Query: 440  IQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSP 499
            IQ+FEP+LVEGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNNIL P
Sbjct: 436  IQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHP 495

Query: 500  ANGSPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRME 559
            ANG P+IVPSQD+VLGLYY+++    E GE M+F    E+  A +  VV LHA+I  R +
Sbjct: 496  ANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALENKVVTLHAKIRGRFK 555

Query: 560  ----DGKVV----RTTVGRILVWELLPH--CVPFSMVNTTLTKKNIARLVSTAYRDAGTK 609
                DGK V     TT GR+L+ ELLP    VPF   N  +TKKNI++++ T YR  G K
Sbjct: 556  TVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTKKNISKMIDTVYRHCGQK 615

Query: 610  ATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITR 669
             TVI CDR+  +G+ +A RAG++    D+ IP +K  ++   +  V + E+QY DG+IT+
Sbjct: 616  DTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTEALVKEYEQQYNDGLITQ 675

Query: 670  TEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQ 729
             EKYNKVVD W KAT+ V+ EM+  I + +  DP TG ++     NSIYMMS SGARG+ 
Sbjct: 676  GEKYNKVVDAWGKATEKVAEEMMARIKA-VEFDPETGRQK---PMNSIYMMSHSGARGSP 731

Query: 730  DQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSG 789
            +QMRQL GMRGLMAKPSGEIIETPI S+F+EGL+V +YF STHGARKGLADTALKTANSG
Sbjct: 732  NQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLADTALKTANSG 791

Query: 790  YLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETR 849
            YLTRRLVDV QD IV+  DCGT  G+ +T I + G+I   +  R LGR  L  + +P T 
Sbjct: 792  YLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGARILGRTALDDIDNPVTG 851

Query: 850  DLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGET 909
            + +    TL+DE    ++ +  + SV IRSALTC+   G+C +CYGRDLARG  VN+GE 
Sbjct: 852  ENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVCYGRDLARGTPVNMGEA 911

Query: 910  VGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYM 969
            VG+IAAQSIGEPGTQLTMRTFH+GGTA+  +++S  EA + G + +     +RN +G  +
Sbjct: 912  VGVIAAQSIGEPGTQLTMRTFHLGGTAN-VVDQSFLEASYEGTIQIKNRNILRNSEGVLI 970

Query: 970  VMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGV 1029
             MG++  + I+D++G ER    +  GS++ V +G+++++GQ LAEWDP+  P ++EV+G 
Sbjct: 971  AMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTRPMMTEVEGT 1030

Query: 1030 IRFSDIVEGKTFQEKMDEATRMTTQTIIEYRTT----NFRPSISICDEHGEVKMRGNNIP 1085
            + F D+V+G +  E  DE+T +T + +I++R+T    + +P+I I D  G V        
Sbjct: 1031 VHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASGAVAKLSRGGE 1090

Query: 1086 ATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVV 1145
            A + L V AI+ V+ G  +  GD++AR P E++KTKDI GGLPRVAELFE R+PKD A++
Sbjct: 1091 ARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAII 1150

Query: 1146 SEIAGIVTYAGETKGKRKLVVTP-EIG-EAKEYLVPKGKHITVTDGDFVEAGDLLTEGHP 1203
            +EI G +    + K KR++++ P E G E  EYL+PKGK   + +GD++E G+ + +G+P
Sbjct: 1151 AEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIEKGEYILDGNP 1210

Query: 1204 ELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFL 1263
              HDIL  +G + LA YL +EIQEVYR QGV I+DKHIEVIVRQML+KV + D G + ++
Sbjct: 1211 APHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYI 1270

Query: 1264 VGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEA 1323
            VG+ VD+ E    N R + EG+ PA  EP++LGIT+ASL T SFISAASFQETTKVLTEA
Sbjct: 1271 VGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKVLTEA 1330

Query: 1324 SLRGKMDYLRGLKENVIVGRLIPAGTG------YREYVNTDILVPEQRER 1367
            ++ GK D L+GLKENVIVGRLIPAGTG       R   + D L+ E+R +
Sbjct: 1331 AIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK 1380