Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

 Score =  264 bits (675), Expect = 3e-75
 Identities = 151/337 (44%), Positives = 207/337 (61%), Gaps = 15/337 (4%)

Query: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67
           IIG++  + +VFR +G+++ ++ TVL+ GESGTGKEL+  ALH +S RA  PF+ +N  A
Sbjct: 141 IIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAA 200

Query: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127
           IPKDL+ESELFGHEKGAFT A   R GRFE ADGGT+FLDEIG+M    Q ++LRVL + 
Sbjct: 201 IPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADG 260

Query: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187
           E  RVGG    KVDVRI+AAT+++LE  V AG+FREDL++RLNVI +H+P + +R  DI 
Sbjct: 261 EFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRMSDRREDIP 320

Query: 188 VLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPA 247
            LA HFL R  +        L  +T + L    WPGN+R+LEN    ++++A G  V  +
Sbjct: 321 TLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHIS 380

Query: 248 DLPRKLLDEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGLKDFLDT 307
           DLP +LL       +LP+ +  AP  +     R       W   A  R +   L   +  
Sbjct: 381 DLPPELL-------SLPQDS--APVTNWEQALR------QWADQALARGQSNLLDSAVPA 425

Query: 308 MEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344
            E  +++ AL    G +  AA +LG  R TL  K+K+
Sbjct: 426 FERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKE 462