Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 491 a.a., Transcriptional regulator FleQ from Pseudomonas putida KT2440

 Score =  296 bits (758), Expect = 8e-85
 Identities = 160/343 (46%), Positives = 227/343 (66%), Gaps = 17/343 (4%)

Query: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67
           ++G S  +  V +M+ +VA TD++VL+ GESGTGKE++ R LH +S+R + PFVP+NCGA
Sbjct: 146 LVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNCGA 205

Query: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127
           IP +LLESELFGHEKGAFT AI SR GRFELA+GGT+FLDEIG+M L +QVK+LRVLQE+
Sbjct: 206 IPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQER 265

Query: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187
             ERVG   T+ +DVRI+AAT+++LE  +  G FREDLYYRLNV P+ + PLRER  DI 
Sbjct: 266 TFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIP 325

Query: 188 VLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPA 247
           +L    + R  E ++R  +     +   L  + WPGN+REL N +ER++I+    ++  +
Sbjct: 326 LLMNELISRM-EHEKRGSIRFNSASIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGVS 384

Query: 248 DLPRKLL------DEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGL 301
           +LP+K        +++ D +       VA   H            ++   A +   G+ L
Sbjct: 385 ELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTP----------NFSNHAMLPPEGLDL 434

Query: 302 KDFLDTMEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344
           KD+L ++E  L+Q+AL  A G+  +AAE L I+RTTL+EK++K
Sbjct: 435 KDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRK 477