Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  281 bits (720), Expect = 2e-80
 Identities = 160/330 (48%), Positives = 209/330 (63%), Gaps = 27/330 (8%)

Query: 17  QVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGAIPKDLLESE 76
           Q+  +  +VA +DSTVL++GESGTGKE+L R +H  S RA QPFV INC AIP ++LE+ 
Sbjct: 137 QLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPFVAINCAAIPDNMLEAT 196

Query: 77  LFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEKEIERVGGTG 136
           LFGHEKGAFT AI ++ G+FE A+GGT+ LDEI EM + LQ K+LRVLQE+E+ERVGG  
Sbjct: 197 LFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPMALQAKLLRVLQEREVERVGGRK 256

Query: 137 TKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDILVLAEHFLER 196
              +D+R++A TNRDL  EVAAGRFREDLYYRL+V PL   PLRER GDIL LAE  L R
Sbjct: 257 PISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRERPGDILQLAERLLAR 316

Query: 197 FCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPADLPRKLLDE 256
              + + A + L+P  R  L AY+WPGN+REL+N ++R  IL +G +++ AD        
Sbjct: 317 HVAKMKHASVRLSPAARACLQAYAWPGNVRELDNALQRALILQQGGVIEAADFCL----- 371

Query: 257 VGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGLKDFLDTMEDRLLQEA 316
                 +P  A   P   + +V   AGG  D     DMR+            E +++ + 
Sbjct: 372 ---AGAIPLSAGTEP---SLEVVADAGGLGD-----DMRRH-----------EYQMIIDT 409

Query: 317 LAMAEGVKNQAAEILGIKRTTLIEKLKKKR 346
           L    G + +AAE LGI   TL  KL + R
Sbjct: 410 LRAERGRRKEAAERLGISPRTLRYKLAQMR 439