Pairwise Alignments

Query, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  269 bits (688), Expect = 1e-76
 Identities = 152/341 (44%), Positives = 211/341 (61%), Gaps = 12/341 (3%)

Query: 4   DTCGIIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPI 63
           D   ++G S  + +V++ +G+ APTD+ VLV GESGTGKEL+ RA++ +S RA++P++ I
Sbjct: 138 DAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAIYQHSLRAERPYLVI 197

Query: 64  NCGAIPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRV 123
           NC AIP  LLESELFG+EKGAFT A   R G+ E A GGT+FLDEIG+M L +Q K+LR+
Sbjct: 198 NCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEIGDMPLGIQAKLLRL 257

Query: 124 LQEKEIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERG 183
           LQE++IER+GG  T  VDVRI+AATN DLE  VA GRFREDLYYRL V+ L LPPLRER 
Sbjct: 258 LQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERR 317

Query: 184 GDILVLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDI 243
            DI  LA  FL RF          ++ +    + A+ WPGN+REL N +++  +   G  
Sbjct: 318 EDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELGNAIQKALVFNRGAP 377

Query: 244 VDPADLPRKLLDEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGLKD 303
           + P D+ R+ L+ V    +  E    A       V R   GG D              + 
Sbjct: 378 LLPEDI-RQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSGGDD-----------NAFET 425

Query: 304 FLDTMEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344
            +D +   +++EAL    G + +AA +LG+ R TL+ ++++
Sbjct: 426 IMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMER 466