Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 343 a.a., Sialic acid-binding periplasmic protein SiaP from Xanthobacter sp. DMC5

 Score =  100 bits (249), Expect = 5e-26
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 23/310 (7%)

Query: 2   RNFFKANAIAAI--ACIAMLAAGSYAEA-AKRITIRLAHPMAPGNNVTLGYEKFKEIVEA 58
           R   KA+A  A+  A    L A + A A +   + + A+ +   + + +  ++    ++A
Sbjct: 6   RTLIKASAATALTGAIAPALFAPTVARAQSAEFSYKYANNLPVTHPMNVRAQEMAAKIKA 65

Query: 59  KSNGKVRIQLFGNCMLGSDRVTMEATQRGTLEMASSS----SPNMTNFSKEMMVFDLPYI 114
           ++ G+V I +F +  LG D   +   + G +E  + S    S  + N S   + F  P  
Sbjct: 66  ETKGRVEINIFPSSQLGGDTDMLSQLRSGAIEFFTLSPLILSTLVPNASISGIGFAFPDY 125

Query: 115 TSPEHQEKLYKALDEGALGERLDAIAAGIGLKPI-MYSEYGYRNFATTKKPIKTADDLKN 173
            S      ++KA+D G LG  +    +  G+  +    + G+R   T+ KPI+TA DLK 
Sbjct: 126 AS------VWKAMD-GDLGTYVRGQISKAGIVAMDKIWDNGFRQITTSTKPIETAADLKG 178

Query: 174 LKVRTTDSPIEVAVASALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRH 233
           LK+R   SP+  ++  A    P  +++ E YTALQ   VD + N   +++ AK  EV ++
Sbjct: 179 LKIRVPVSPLWTSMFKAFDSAPASLNFAEVYTALQTRAVDAQENPLAIISTAKLYEVQKY 238

Query: 234 AMDSAHNYSMHLLMINKAYFDKLPADVQQILVDSGKEALAYQR----AISNDLEKKAEQA 289
              + H +     + N+  F+KLP D++ I+  +  EA   QR    A++N+L K+    
Sbjct: 239 CSLTNHMWDGFWFLANRRAFEKLPDDLRAIVAKNINEAGLKQRDDVFALNNNLRKE---- 294

Query: 290 FVERGIVITK 299
             E+G+   +
Sbjct: 295 LAEKGLTFNE 304