Pairwise Alignments

Query, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 331 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

 Score =  115 bits (287), Expect = 2e-30
 Identities = 88/314 (28%), Positives = 152/314 (48%), Gaps = 7/314 (2%)

Query: 10  IAAIACIAMLAAGSYAEAAKRITIRLAHPMAPGNNVTLGYEKFKEIVEAKSNGKVRIQLF 69
           I+ +  +A+ A    A  A+  T+ L+ P A  + +TL   KF E+V  K++GK++I++F
Sbjct: 3   ISKLYGLALAATMLVASIAQAETLTLSTPDADNSEITLSANKFAELVSKKTDGKLKIKVF 62

Query: 70  GNCML--GSDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYITSPEHQEKLYKAL 127
            N  L  G     ++    G+L+M  +S+     F+ +     +PY      Q ++Y   
Sbjct: 63  PNGTLYGGDPSAGVKQLAGGSLDMLLNSTSLYATFNPKFTAIAIPYQFRDIDQLRVYL-- 120

Query: 128 DEGALGERLDAIAAGIGLKPIMYSEYGYRNFATTKKPIKTADDLKNLKVRTTDSPIEVAV 187
            +  LG+ L    + IG+  +       R    +K PIK+  DLK +K+R  ++P+ V  
Sbjct: 121 -DSELGKELSGDLSKIGILGLDLWSRPLRQITNSKAPIKSPVDLKGMKLRVPNNPLWVEF 179

Query: 188 ASALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAMDSAHNYSMHLLM 247
             A+G  PTP+++ E Y ALQ   VDG+ N   +   AK  EV ++   S H     +L 
Sbjct: 180 FGAMGAAPTPMAFAEVYNALQLKVVDGQENPVNVPVSAKLYEVQKYLTISNHIADAWVLG 239

Query: 248 INKAYFDKLPADVQQILVDSGKEALAYQ-RAISNDLEKKAEQAFVERGIVITKLAPEERA 306
           +N A F+ L    +  L ++  E  A++ +  + D++K  E    + G+ I  L  +ER 
Sbjct: 240 MNPARFEGLDEGFKTALKEAAVETEAWKAQNDAADIDKSLE-TLKKNGMEINTLTDDERK 298

Query: 307 KMRELTRPVWDKFS 320
               +   +  KFS
Sbjct: 299 AFVAVAVGLSAKFS 312