Pairwise Alignments

Query, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  215 bits (547), Expect = 2e-60
 Identities = 126/341 (36%), Positives = 190/341 (55%), Gaps = 24/341 (7%)

Query: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTDLETTMNPLAGAEAR-------------- 61
           +L++L   +   LG+ ++ F VI   PG P +        AG                  
Sbjct: 5   VLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLAEAKTAGRGGGGGGFESGGGSYRGN 64

Query: 62  -----KRLESI---YGLDQPLYVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRERLPLTV 113
                KRLE I   YG D+P + +  Q LG+  R D G S   + + V   I E+LP+++
Sbjct: 65  QGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQN-KDVWTLILEKLPVSI 123

Query: 114 GMNVAALFLTLLLAVPIGVASAHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLFFGIHL 173
            + +   F++  +AVP+GVA A   G  FD   T++V IG+A+PGF L + L++ FG  L
Sbjct: 124 SLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVALLVVFGGQL 183

Query: 174 GWLPLSGLTSLDYATLSPWGKFLDVARHLALPLFIYTFGSLAGMSRFMRSAMLEVLRQDY 233
            W PL GLTS ++  LS   + +D   H+ LP+     GS A  +   ++A LE +R+ Y
Sbjct: 184 QWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTAMLTKNAFLEEIRKQY 243

Query: 234 ILTARAKGLPTRTVIFRHALRNALLPVITILGLSLPG-LIGGSVIIESIFALPGLGQLFY 292
           +LTARAKGL  R V+++H  RNAL+P+IT L  +  G    GS++IE++F+L GLG L Y
Sbjct: 244 VLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLLIETLFSLDGLGLLGY 303

Query: 293 TAVMARDYPLIMGNLVLGAVLTQAGNLIADLCYGLADPRIR 333
            +V+ RDYP+++G L L  ++     LI+DLCY   DPR++
Sbjct: 304 ESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVK 344