Pairwise Alignments

Query, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 399 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

 Score =  115 bits (289), Expect = 2e-30
 Identities = 110/417 (26%), Positives = 186/417 (44%), Gaps = 62/417 (14%)

Query: 2   TRRRMYAILALILCSIAVGVWLYARRGTADPVIRETATVTRGEVRKTLEATGIIKPQVGA 61
           TRRR    +AL L + AV + L+  + +  P    TA     ++ +T+ A G I+ Q   
Sbjct: 7   TRRR--TTIALGLIAAAVLLHLFFNKPSPTPNTLTTAAEI-ADLEQTVLADGKIEAQ--K 61

Query: 62  VVKTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVET 121
           +V  G++ +G I+ LHV++GD+V+K ++IAEIDD  Q+  L   EA L+  +A+ A    
Sbjct: 62  LVSVGAQASGQIKALHVELGDKVKKGQLIAEIDDLTQQDTLKNGEAALKNIQAQRA---- 117

Query: 122 SYPLQIREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLSNVLVA 181
                         A  AE     L+ +R++ L+++ + A+   D A+         L A
Sbjct: 118 --------------AKLAELRNNELSWQRQQMLMKRGVGAQADYDSAKA-------TLDA 156

Query: 182 REATLDRLRNEFRTERKRTRQAAEQAKAALETARIRLSYAVIRSPISGIVSQVTAPEGET 241
             A +D L  +             QA+  + TA++ L Y  IRSP+ G V  +    G+T
Sbjct: 157 TRANIDALDAQII-----------QAQITVNTAKVNLGYTQIRSPMDGTVVAIPVEAGQT 205

Query: 242 VVAGFQVVNLITILDPSRLEMWIYVDETDVGQVRPGLDVEFRVDSQPEKTFRGVVDQIYP 301
           V A      +  + +   + + + + E DV +V+ G+ V F +  +P   +   +  I P
Sbjct: 206 VNAIQTTPTIAKVANLDTMTIKVKISEADVVKVKTGMPVWFSILGEPNNRYEATLSSIEP 265

Query: 302 QPE-------------------IRDNIVYYQALVRLDPATSEHLRPEMTTQCRIIVASKK 342
            P+                        +YY  L  +       LR  MT Q  I+++S K
Sbjct: 266 APDSINTDSTTTSSSSSSSTSSSSSTAIYYNGLFDVKNPDGV-LRISMTAQVYILLSSVK 324

Query: 343 DVLVIPNDAIKWVDG-GRVVFIDDGGKVRRVKPVLGTAGPDVTEVVEGLAEGQKVGV 398
           + +V+P  A+   DG   V  ++   KV      LG      T++  GL+ G++V V
Sbjct: 325 NAIVVPATALTSRDGMWYVQVVNANKKVESRLVTLGLNDNVRTQIRSGLSVGEQVVV 381