Pairwise Alignments

Query, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 343 a.a., HlyD family secretion protein from Magnetospirillum magneticum AMB-1

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 60  GAVVKTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARV 119
           G +     +  G + +L  +    V K +V+  ID+R+ RA+LDEA  +++   A+  ++
Sbjct: 41  GDITTISPKVAGHVVELLARDNRAVAKGDVLVRIDERDYRARLDEAAGQVKARLAQLIQI 100

Query: 120 ETSYPLQ---IREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLS 176
           +    +Q   I ++ A + AARAE   A    ER R LV +D  +R   D  Q  +    
Sbjct: 101 DDRVAVQEAVITQSGASISAARAEMVRAKADYERSRALVREDYVSRQRFDITQADAARAE 160

Query: 177 NVLVAREATLDRLRNE---FRTERKRTRQAAEQAKAALETARIRLSYAVIRSPISGIVSQ 233
             L    A L   R +     +ER       EQAKA L  A   L    IRSP+ G++  
Sbjct: 161 AGLTGSGAGLQAARRQLSVLASERNVALAQLEQAKATLVVAETELEATTIRSPVDGVIGN 220

Query: 234 VTAPEGETVVAGFQVVNLITILDPSRLEMWIYVD--ETDVGQVRPGLDVEFRVDSQPEKT 291
               +G+ V  G  ++ ++ + +     +WI  +  ET +G++ PG  VE +VD+ P   
Sbjct: 221 RAVRDGQYVRPGQTLLAVVPLGN-----VWIDANFKETQIGRMTPGNRVEIKVDAFPGAV 275

Query: 292 FRGVVDQIYP 301
             G VD   P
Sbjct: 276 IGGSVDSFAP 285



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 59/270 (21%), Positives = 105/270 (38%), Gaps = 29/270 (10%)

Query: 36  ETATVTRGEVRKTLEATGIIKPQVGAVVKTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDD 95
           E A   +  + + ++    +  Q   + ++G+  +    ++ V+     E+   +   +D
Sbjct: 85  EAAGQVKARLAQLIQIDDRVAVQEAVITQSGASISAARAEM-VRAKADYERSRALVR-ED 142

Query: 96  REQRAQLDEAEAKLRQAEA---------EAARVETSYPLQIRE-AEAQVQAARA-----E 140
              R + D  +A   +AEA         +AAR + S     R  A AQ++ A+A     E
Sbjct: 143 YVSRQRFDITQADAARAEAGLTGSGAGLQAARRQLSVLASERNVALAQLEQAKATLVVAE 202

Query: 141 SEYAALTMERKRKLVEQDLDARNSLDEAQQR-SRSLSNVLVAREATLDRLRNEFRTERKR 199
           +E  A T+   R  V+  +  R   D    R  ++L  V+      +D    E +  R  
Sbjct: 203 TELEATTI---RSPVDGVIGNRAVRDGQYVRPGQTLLAVVPLGNVWIDANFKETQIGRMT 259

Query: 200 TRQAAEQAKAALETARIRLSYAVIRSPISGIVSQVTAPEGETVVAGFQVVNLITILDPSR 259
                E    A   A I  S     +P SG    +  PE  T        N   ++    
Sbjct: 260 PGNRVEIKVDAFPGAVIGGSVDSF-APASGAKFSLLPPENATG-------NFTKVVQRIP 311

Query: 260 LEMWIYVDETDVGQVRPGLDVEFRVDSQPE 289
           + + +  D    GQ+RPGL V  +VD++ +
Sbjct: 312 VRIRVDQDSPLAGQLRPGLSVVVKVDTRDQ 341