Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 244 a.a., 23S rRNA methyltransferase from Magnetospirillum magneticum AMB-1

 Score =  126 bits (316), Expect = 4e-34
 Identities = 77/201 (38%), Positives = 117/201 (58%), Gaps = 9/201 (4%)

Query: 2   KKYRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVG- 60
           ++  D Y  +AK+  Y +R+ +K+ ++D RF I + G++V+DLGAAPG W+  A EKVG 
Sbjct: 44  RQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKVGA 103

Query: 61  --PRG--RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIA-PFDVVISDMAPR 115
             P+G  +V+  D+ E D + P  +T   +  F   +A + L + +  P DVV+SDMA  
Sbjct: 104 LKPKGGGKVVGMDILEWDPL-PGAITLQGD--FLADDAPDRLKEALGGPADVVLSDMAAP 160

Query: 116 TTGTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSF 175
           TTG   TD  R + L   AL  A   L  GG+FV K+F G   + L+  +++ F+ V+  
Sbjct: 161 TTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQLKKNFTTVRHA 220

Query: 176 KPKSSRAESKETFYVCLGYRG 196
           KP +SR  S ET+ V  G+RG
Sbjct: 221 KPPASRQGSAETYVVATGFRG 241