Pairwise Alignments

Query, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 209 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE from Dickeya dadantii 3937

 Score =  125 bits (314), Expect = 5e-34
 Identities = 73/192 (38%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 4   YRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGPRG 63
           + D Y  +A+++   +R+ +KL EI    ++F+ GM V+DLGAAPG WS     ++G +G
Sbjct: 18  FSDKYVQQAQKKGLRSRAWFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYVVSQIGGKG 77

Query: 64  RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIAP--FDVVISDMAPRTTGTRF 121
           R++ACDL   D +    V F+Q + F      + LL+ +      VV+SDMAP  +GT  
Sbjct: 78  RIIACDLLPMDPIV--GVDFLQGD-FRDELVLKTLLERVGDEKVQVVMSDMAPNMSGTPE 134

Query: 122 TDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKPKSSR 181
            D  R++ L   AL +    L  GGSFVVK+F G    E ++ +R  F+ VK  KP +SR
Sbjct: 135 VDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLREIRSLFTTVKIRKPDASR 194

Query: 182 AESKETFYVCLG 193
           A S+E + V  G
Sbjct: 195 ARSREVYIVATG 206