Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score =  579 bits (1492), Expect = e-169
 Identities = 337/741 (45%), Positives = 454/741 (61%), Gaps = 37/741 (4%)

Query: 10  VAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRT 69
           +  +LAA++ +   Q  AA++L D G T+PF+ARYRKEAT GLD+  L  L      LR 
Sbjct: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63

Query: 70  LDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAP 129
           L+ RR A++ ++ E+ +LTP+L  A+  A T   LEDIYLPF+ KR T+   ARE G+ P
Sbjct: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123

Query: 130 LAERLLEQRG------AQAGQLAAPFVDEAKGVPDTAAA---LAGARDIIAETVSEDRAT 180
           LA++LL          A+A    A  +D+ K  PD +     L G RDI++E  +ED A 
Sbjct: 124 LADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAAL 183

Query: 181 RATLRDIFVRRATLRSKVARGKEEQ---AATYRDHFDRSEHAAAAPAHRLLAMFRGEREE 237
             +LR        L+S +  GK+E     A +RD+F+  E     P+HR LA+FRG   +
Sbjct: 184 VQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALD 243

Query: 238 LLDVR----VRPDD---DIAVG--ALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPS 288
           +LD +    V P+     +A G  ALH  W    A     D      A T  W   LA S
Sbjct: 244 ILDAKLVLPVEPEPGKPSVAEGRIALHLGW--SHAGRPADDLLRKCVAWT--WRVKLALS 299

Query: 289 LENEFRTALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGA 348
            E +  T LRE AE  AI VFA NLR+LLLA P GPR  + LDPG RTG K+  +D+ G 
Sbjct: 300 TERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGK 359

Query: 349 LLHHEVIHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKS-------- 400
           L+    + P         +  TL +LC +HG+  +A+GNGTA RET+             
Sbjct: 360 LVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKM 419

Query: 401 ---AGLPP-HVTVALVDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVK 456
              AG P   V   +V E GASVYSASE A  E PD DV++RGA SI RRL DPLAELVK
Sbjct: 420 AAQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVK 479

Query: 457 VDPRSLGVGQYQHDVDQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKG 516
           +DP+S+GVGQYQHDV+Q+ L R L+ VV  CVN+VGVD+NTAS  LL+ VSG+  ++AK 
Sbjct: 480 IDPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKA 539

Query: 517 IVALRAVNGPFRTRRDLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRM 576
           +V  R  NG F TR+ LL V   GPKAFEQ+AGFLR+ GG +PLD + VHPE+Y +V ++
Sbjct: 540 VVRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQI 599

Query: 577 AEDTGCSVPDLMRDATRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFA 636
              TG  + +LM  A   + L+ E + +++ G+ T++DI+ EL +PGRDPRP F+V  F 
Sbjct: 600 IVKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFN 659

Query: 637 EGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGR 696
           +GV+ + D++ GM L G V+NV +FGAFVD+GVH+DGLVHVSQL+ +FV D  EVV  G 
Sbjct: 660 DGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGD 719

Query: 697 KVRVRVLDVDRQRERINLTLK 717
            V+V+V++VD  R+RI L++K
Sbjct: 720 IVKVKVMEVDVARKRIGLSMK 740