Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

 Score =  638 bits (1646), Expect = 0.0
 Identities = 350/723 (48%), Positives = 461/723 (63%), Gaps = 19/723 (2%)

Query: 8   DSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERL 67
           DS+  R+A +LG+   Q  AA+ L DEG T+PF+ARYRKE TG LD+  L  L +    L
Sbjct: 89  DSINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYL 148

Query: 68  RTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGL 127
           R LD+RR +I++S+ E+ +LTP+LA+ +  A T T LED+YLP++ KR T+   A E GL
Sbjct: 149 RELDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 208

Query: 128 APLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDI 187
             LA+ L           AA FV+  KGV D  AAL GA+ I+ E  +ED A    LR  
Sbjct: 209 GELADGLFNDPTLAPESEAARFVNAEKGVADVKAALEGAKYILMERFAEDAALLDKLRSY 268

Query: 188 FVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDD 247
             + A L ++V  GKEE+ A +RD+F   E    AP+HR LA+FRG  E +L V ++  +
Sbjct: 269 LKQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVLSVSLKVGE 328

Query: 248 DIAVGALH--------RRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRE 299
           ++  G LH           ++ R+  A     EV       W   L   LE +    LR+
Sbjct: 329 ELP-GTLHPCELMIGNHVGIENRSRPADKWLGEVVRW---TWKVKLYTHLETDLFGELRD 384

Query: 300 RAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLT 359
            AE EAI VFA NL +LLLA P GPR TL  DPG RTG K+  +DA G LL H  ++P  
Sbjct: 385 SAEGEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHA 444

Query: 360 GGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFV-----KSAGLPPHVTVALVDE 414
             +   R  + +  LC +H +E +A+GNGTA RE++  V     K   L   +T  +V E
Sbjct: 445 PKNDWDRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKYPALK--ITKIMVSE 502

Query: 415 RGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQN 474
            GASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHDV Q 
Sbjct: 503 AGASVYSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQL 562

Query: 475 ALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLL 534
            L R L+ VV  CVNAVGVDVNTAS  LL  +SG+   LA+ IVA R  NGPF TR  L 
Sbjct: 563 KLARGLDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALK 622

Query: 535 KVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRR 594
           KV RLG K FEQAAGFLRV  G  PLDASAVHPE+Y +V+R+A DT   +  L+ D++  
Sbjct: 623 KVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFL 682

Query: 595 EALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGI 654
           + L  +++ D+  GLPT+ DI+ EL +PGRDPRP F+   F +GV  + D++PGM L G+
Sbjct: 683 KRLDPKKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGV 742

Query: 655 VTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINL 714
           VTNVT FGAFVDIGVH+DGLVH+S L+++FV+DP E V  G  V+V+V++VD  R+R+ L
Sbjct: 743 VTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGL 802

Query: 715 TLK 717
           +++
Sbjct: 803 SMR 805